View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_34 (Length: 429)
Name: NF1348_high_34
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 32 - 424
Target Start/End: Original strand, 37890444 - 37890836
Alignment:
| Q |
32 |
tttcatgtttctcctttgatccaaacatacctcagatagatggcactaactattttaatttgatattgaaacaatgcaccagggatctcctaggannnnn |
131 |
Q |
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| T |
37890444 |
tttcatgtttctcctttgatccaaacatacctcagatagatggcactaactattttaatttgatattgaaacattgcaccagggatctcctaggattttt |
37890543 |
T |
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| Q |
132 |
nnnncttaaaaattgtttgtattggttactcttcaggggttgcaaaaggttgagagctaagggaaaacggttagtggcagataatcttgttcttccaatg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37890544 |
ttttcttaaaaattgtttgtattggttactcttcaggggttgtaaaaggttgagagctaagggaaaacggttagtggcagataatcttgttcttccaatg |
37890643 |
T |
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| Q |
232 |
ggatggagattattctcttacaatagcctctcttcgtctctgatgagggttgcaaaaccacatagggtaccactctgacaaaggttaagactattatcga |
331 |
Q |
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| T |
37890644 |
ggatggagattattctcttacaatagcctctcttcgtctctgatgagggttgcaaaaccacatagggtaccactctcacaaaggttaagactattatcga |
37890743 |
T |
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| Q |
332 |
ttctgtcatgcatgcctttggagatttttgccttgttgaaatgttggttttaggtcattttcaatgacaatgaaatgtcttatctgtggtgct |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37890744 |
ttctgtcatgcatgcctttggagatttttgccttgttgaaatgttggttttaggtcattttcaatgacaatgaaatgtcttatctgtgttgct |
37890836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 384
Target Start/End: Original strand, 37185568 - 37185916
Alignment:
| Q |
32 |
tttcatgtttctcctttgatccaaacatacctcagatagatggcactaactattttaatttgatattgaaacaatgcaccagggatctcctaggannnnn |
131 |
Q |
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|||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| || |||| |||| |||| ||| |
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| T |
37185568 |
tttcatattcctcctttgatccaaacatacctcagattgatggcacttactattttaatttgataatgaaacattgtaccatggatttcctgggatttat |
37185667 |
T |
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| Q |
132 |
nnnncttaaaaattgtttgtattggttactcttcaggggttgcaaaaggttgagagctaagggaaaacggttagtggcagataatcttgttcttccaatg |
231 |
Q |
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|| || |||||||||||| ||||||||||||||| || ||| |||| | |||| ||| |||||| | ||||| |||||||||||| | || |
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| T |
37185668 |
-----ttttaatttgtttgtattgattactcttcaggggtagcttaagattgacggttaagaaaaattggttagcgtcagatcatcttgttcttcta-tg |
37185761 |
T |
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| Q |
232 |
ggatggagattattctcttacaatagcctctcttcgtctctgatgagggttgcaaaaccacatagggtaccactctgacaaaggttaagactattatcga |
331 |
Q |
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|||||||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||| ||||||| | |
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| T |
37185762 |
ggatggagatcattctcttacaatagccttttttcgtctctgatgagggttccaaaaccacattggctaccactctcacaaaggttaagattattatcaa |
37185861 |
T |
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| Q |
332 |
ttctgtcatgcatgcc--tttggagatttttgccttgttgaaatgttggttttag |
384 |
Q |
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|||||||||| ||||| |||||| ||||||| |||||||||||||||||||||| |
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| T |
37185862 |
ttctgtcatggatgcctgtttggacatttttgtcttgttgaaatgttggttttag |
37185916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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