View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_36 (Length: 424)
Name: NF1348_high_36
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 8285354 - 8285205
Alignment:
| Q |
1 |
cctatcctttcaaatcacccaagaacttacaagccaaattaaattcataaaaaacattgagacttcgcaaaacctgatgcacaagcaaagtttgtctatt |
100 |
Q |
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| T |
8285354 |
cctatcctttcaaatcacccaagaacttacaagccaaattaaattcataaaaaacattgagacttcgcaaaacctgatgcacaagcaaagtttgtctatt |
8285255 |
T |
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| Q |
101 |
gaggacttttaaaaagatccaaagatgggtccttactatttttggtaacg |
150 |
Q |
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| T |
8285254 |
gaggacttttaaaaagatccaaagatgggtccttactatttttggtaacg |
8285205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 243 - 380
Target Start/End: Complemental strand, 8285112 - 8284975
Alignment:
| Q |
243 |
gtgccacgtttaaacctttttagaggtccacatgaaatgcggactattacaaaaatagaatagttaaacacttcnnnnnnngaacacatcctatatagtt |
342 |
Q |
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| T |
8285112 |
gtgccacgtttaaacctttttagaggtccatatgaaatgcggactattacaaaaatagaatagttaaacacttctttttttgaacacatcctatatagtt |
8285013 |
T |
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| Q |
343 |
aattaaagttgttggttgggagggtaagagtagaaggt |
380 |
Q |
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| T |
8285012 |
aattaaagttgttggttgggagggtaagagtagaaggt |
8284975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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