View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348_high_42 (Length: 385)

Name: NF1348_high_42
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348_high_42
NF1348_high_42
[»] chr4 (25 HSPs)
chr4 (10-385)||(27415739-27416114)
chr4 (47-385)||(27412782-27413115)
chr4 (40-385)||(27569734-27570071)
chr4 (114-385)||(27565711-27565973)
chr4 (279-385)||(27425930-27426035)
chr4 (279-385)||(27420526-27420631)
chr4 (312-385)||(27504040-27504113)
chr4 (226-384)||(27497181-27497343)
chr4 (324-385)||(27506816-27506877)
chr4 (302-385)||(27423340-27423423)
chr4 (234-302)||(27490160-27490232)
chr4 (307-385)||(27468271-27468349)
chr4 (312-385)||(27475528-27475601)
chr4 (324-385)||(27563307-27563368)
chr4 (71-167)||(27423546-27423642)
chr4 (307-385)||(27515009-27515087)
chr4 (117-184)||(27426120-27426187)
chr4 (119-193)||(27420676-27420748)
chr4 (323-385)||(27478843-27478905)
chr4 (323-385)||(27524642-27524704)
chr4 (312-385)||(27508970-27509043)
chr4 (329-385)||(27485909-27485965)
chr4 (328-382)||(27548961-27549015)
chr4 (324-378)||(27585813-27585867)
chr4 (353-385)||(17970417-17970449)
[»] chr5 (2 HSPs)
chr5 (227-385)||(1754806-1754955)
chr5 (312-385)||(1756706-1756779)
[»] chr3 (3 HSPs)
chr3 (350-385)||(50910078-50910113)
chr3 (353-385)||(48840702-48840734)
chr3 (353-385)||(55084904-55084936)
[»] chr2 (1 HSPs)
chr2 (353-385)||(3073687-3073719)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 385
Target Start/End: Complemental strand, 27416114 - 27415739
Alignment:
Q  10 aagaatatgcgtgtgctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttg 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27416114 aagaatatgtgtgtgctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttg 27416015  T
Q  110 taagttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatt 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27416014 taagttctgaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatt 27415915  T
Q  210 tcaatctaatggtcttttttcccatctttacaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27415914 tcaatctaatggtcttttttcccatctttacaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtg 27415815  T
Q  310 ttagattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27415814 ttagattcatattccgttcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 27415739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 47 - 385
Target Start/End: Complemental strand, 27413115 - 27412782
Alignment:
Q  47 ttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagagga 146  Q
    |||||||| |||| |||||||||   ||||||||||||  |||||||||||| ||  ||||  ||||||  ||||||||||||||||||||  |||| ||    
T  27413115 ttcagaataccaagtcattttttaa-ttatagcaagcaatattactcatatagtcctatttcttaagtttctaagtgcaataaaccaaaaacatagaaga 27413017  T
Q  147 gctgcttgagtagtcgaattcgttttcacta-aacaaaataatatatacgctatataaagaatttcaatctaatggtct-tttttcccatctttacaatt 244  Q
    | | ||||| |||||||||||||||||| || ||||||| ||||| ||   |  |||||   | |||||||||| |||  ||||||||||||||||||||    
T  27413016 gttacttgaatagtcgaattcgttttcattataacaaaa-aatatttatattccataaatt-tgtcaatctaatagtcactttttcccatctttacaatt 27412919  T
Q  245 tgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtgttagattcatattccattcaagcgagatgttatgt 344  Q
    | || | | ||||||||||||||||  | |||   |||||||||||||||||| ||||||  |||| |||||||||  |||||| ||||||||||||| |    
T  27412918 tcattagatgcctagtttacaaaaaaatgtct---ctactaaactatgtcagtttcttttg-gtgtcagattcatagcccattcgagcgagatgttatat 27412823  T
Q  345 gttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  27412822 gttgaaagacatcttccgtgcaaggaatggtgaggccaccc 27412782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 385
Target Start/End: Original strand, 27569734 - 27570071
Alignment:
Q  40 gaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaag 139  Q
    ||||||| |||| || |||| ||  ||||| ||||||||||||||   ||||| ||||||||  ||   ||| |||||||||||||||||||||||||      
T  27569734 gaaatttctcaggataccaagtccctttttttcttatagcaagcaatgttacttatataatcatatgcagtatgttcttaagtgcaataaaccaaaaaca 27569833  T
Q  140 tagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatttcaatctaatggtc-ttttttcccatcttt 238  Q
     ||||||| |  |||||||||||||||| || ||| |||||||||||   |||  | | ||||||   | |||||||||||||| ||||||| |||||||    
T  27569834 gagaggagatatttgagtagtcgaattcattgtcattaaacaaaata---tatttgttctataaatt-tctcaatctaatggtcattttttctcatcttt 27569929  T
Q  239 acaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtgttagattcatattccattcaagcgagatg 338  Q
    |||||||| ||| | ||  ||||||||||||  | ||    ||||||||||||||||||||||| |  ||||||||||||||| || |||| ||||||||    
T  27569930 acaatttgttaagatgcg-agtttacaaaaaaatatca---ctactaaactatgtcagtctcttctg-gtgttagattcatatcccgttcatgcgagatg 27570024  T
Q  339 ttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||    
T  27570025 ttatatgttgaaagatatcttcggtgcaaggaatggtgaggccaccc 27570071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 385
Target Start/End: Original strand, 27565711 - 27565973
Alignment:
Q  114 ttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatttcaa 213  Q
    ||||||||||||||||||||||||  |||| ||||||||||| ||||||||||| || ||  ||||||||||   ||||||  | |||         |||    
T  27565711 ttcttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaattg-atatacaatttat---------caa 27565800  T
Q  214 tctaatggtc-ttttttcccatctttacaatttgataacaggcctagtttacaaaaatgtctctagtc-tactaaactatgtcagtctcttttttgtgtt 311  Q
    |||||||||| ||||||  ||||||||||||||||||| | ||||||||||||||||  |   ||  | |||||||||||||||||||  |||  |||||    
T  27565801 tctaatggtcatttttttgcatctttacaatttgataagatgcctagtttacaaaaaaataaatatccctactaaactatgtcagtctaatttg-gtgtt 27565899  T
Q  312 agattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    || |||||| ||||||||||| ||| ||||| ||||| |||||||||||    |||||||||||||||||||||    
T  27565900 aggttcatagtccattcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggccaccc 27565973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 279 - 385
Target Start/End: Complemental strand, 27426035 - 27425930
Alignment:
Q  279 tctactaaactatgtcagtctcttttttgtgttagattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgag 378  Q
    ||||||||||||||||||||| ||||  |||| |||||||||  ||||||||||||||||| || |||||||| ||||| || |||||||||||||||||    
T  27426035 tctactaaactatgtcagtctgttttg-gtgtcagattcataggccattcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgag 27425937  T
Q  379 gccaccc 385  Q
    |||||||    
T  27425936 gccaccc 27425930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 385
Target Start/End: Complemental strand, 27420631 - 27420526
Alignment:
Q  279 tctactaaactatgtcagtctcttttttgtgttagattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgag 378  Q
    |||||||||||||||||| |||||||  || | |||||||||  ||||| |||| ||| ||||| ||||||||||||||||| |||||||||||||||||    
T  27420631 tctactaaactatgtcagactcttttg-gtctcagattcatagcccattgaagcaagaagttatatgttgaaagacatcttccgtgcaaggaatggtgag 27420533  T
Q  379 gccaccc 385  Q
    |||||||    
T  27420532 gccaccc 27420526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 27504113 - 27504040
Alignment:
Q  312 agattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  27504113 agattcatagtccattcaagcaagaagttatgtgttggaagacatcttcggtgcaaggaatggtgaggccaccc 27504040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 384
Target Start/End: Original strand, 27497181 - 27497343
Alignment:
Q  226 ttttcccatctttacaatttgataacaggcctagtttacaaaaatgtctcta-----gtctactaaactatgtcagtctcttttttgtgttagattcata 320  Q
    |||||||||| || ||||||||| | | ||||||| ||||||||||||||||     ||||||||||||| ||||||||||||     || | ||| |||    
T  27497181 ttttcccatcattgcaatttgattagatgcctagtatacaaaaatgtctctactctagtctactaaactacgtcagtctctttccac-gtgaaatttata 27497279  T
Q  321 ttccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccacc 384  Q
      |||||||||||||| |||||| |||| ||||||| ||| |||||||||||||||||||||||    
T  27497280 gcccattcaagcgagaagttatgcgttggaagacattttcagtgcaaggaatggtgaggccacc 27497343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 27506877 - 27506816
Alignment:
Q  324 cattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  27506877 cattcaagcaagaagttatgtgttgaaagacatcttcagtgcaaggaatggtgagtccaccc 27506816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 27423423 - 27423340
Alignment:
Q  302 tttttgtgttagattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||| ||||| |||||||| |||||||||| |||| ||||| ||||| || |||||||| |||||||||| |||||||||||||    
T  27423423 ttttggtgtttgattcatagtccattcaagtgagaagttatatgttggaaaacatcttccgtgcaaggaacggtgaggccaccc 27423340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 27490232 - 27490160
Alignment:
Q  234 tctttacaatttgataacaggcctag----tttacaaaaatgtctctagtctactaaactatgtcagtctctt 302  Q
    |||||||||||||||||||  ||||     |||||||||||||||||||||||||||||||||||||||||||    
T  27490232 tctttacaatttgataacattcctacgtactttacaaaaatgtctctagtctactaaactatgtcagtctctt 27490160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 385
Target Start/End: Original strand, 27468271 - 27468349
Alignment:
Q  307 gtgttagattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||| ||||||||| ||||||||||  |||  |||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  27468271 gtgtaagattcatagtccattcaaggaagaaattatatgttggaagacatcttccgtgcaaggaatggtgaggccaccc 27468349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 27475528 - 27475601
Alignment:
Q  312 agattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||||||||  |||||||||| ||| ||||| ||||| ||||||||||| | ||||||||||||||||||||||    
T  27475528 agattcatagcccattcaagcaagaagttatatgttggaagacatcttcggagcaaggaatggtgaggccaccc 27475601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 27563307 - 27563368
Alignment:
Q  324 cattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    ||||||||||||| ||||| ||||||||| ||||||| ||||||||||| ||||||||||||    
T  27563307 cattcaagcgagaagttatatgttgaaaggcatcttcagtgcaaggaattgtgaggccaccc 27563368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 27423642 - 27423546
Alignment:
Q  71 tcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattc 167  Q
    ||||||||||||||  |||||||||||| ||  ||||  |||||| |||||||||||||||||||||   | ||||| || ||||||||||||||||    
T  27423642 tcttatagcaagcaacattactcatatagtcatatttcataagtttttaagtgcaataaaccaaaaacacaaaggagatgtttgagtagtcgaattc 27423546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 385
Target Start/End: Complemental strand, 27515087 - 27515009
Alignment:
Q  307 gtgttagattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||| ||||||||| ||||||||||  |||  |||| || || |||||||||||||| |||||||||||||||||||||    
T  27515087 gtgtaagattcatagtccattcaaggaagaaattatatgctggaagacatcttctgtacaaggaatggtgaggccaccc 27515009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 27426187 - 27426120
Alignment:
Q  117 ttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaa 184  Q
    |||||||| |||||||||||| ||| | |||||||||||||||| |||||| || ||| |||||||||    
T  27426187 ttaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaa 27426120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 27420748 - 27420676
Alignment:
Q  119 aagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatata 193  Q
    |||||||||||||  ||| | ||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||    
T  27420748 aagtgcaataaacataaaca-tagaggatcagcttgagtagtcgaattcgttttcattaaacaaaa-aatatata 27420676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 385
Target Start/End: Original strand, 27478843 - 27478905
Alignment:
Q  323 ccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||||||||| ||| ||||| ||||| || |||||||| | ||||||||||||||||||||||    
T  27478843 ccattcaagcaagaagttatatgttggaacacatcttcggagcaaggaatggtgaggccaccc 27478905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 385
Target Start/End: Complemental strand, 27524704 - 27524642
Alignment:
Q  323 ccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    ||||||||||  || ||||| ||||| ||||||||||| ||||| ||||||||||||||||||    
T  27524704 ccattcaagcatgaagttatatgttggaagacatcttcggtgcacggaatggtgaggccaccc 27524642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 27509043 - 27508970
Alignment:
Q  312 agattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    ||||||||| |||||| |||| ||| ||||| ||||| || |||||||| | ||| ||||||||||||||||||    
T  27509043 agattcatagtccattgaagcaagaagttatatgttggaacacatcttcggagcatggaatggtgaggccaccc 27508970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 385
Target Start/End: Original strand, 27485909 - 27485965
Alignment:
Q  329 aagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||| ||| |||| ||||||||||||  |||| ||||||||||||||||||||||||    
T  27485909 aagcaagaagttacgtgttgaaagacgccttcagtgcaaggaatggtgaggccaccc 27485965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 27548961 - 27549015
Alignment:
Q  328 caagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggcca 382  Q
    ||||||||| |||||||| || ||||||||||| ||||||| ||| |||||||||    
T  27548961 caagcgagacgttatgtgctggaagacatcttcggtgcaagaaatagtgaggcca 27549015  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 27585867 - 27585813
Alignment:
Q  324 cattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgag 378  Q
    ||||||||||| | ||||| ||||  ||| |||||||||||||||||||||||||    
T  27585867 cattcaagcgataagttatatgtttgaaggcatcttctgtgcaaggaatggtgag 27585813  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 17970449 - 17970417
Alignment:
Q  353 acatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||||||||||||||||||| ||||||||||||    
T  17970449 acatcttctgtgcaaggaattgtgaggccaccc 17970417  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 385
Target Start/End: Complemental strand, 1754955 - 1754806
Alignment:
Q  227 tttcccatctttacaatttgataacaggcctagtttacaaaaatgtctctagtctactaaactatgtcagtctcttttttgtgttagattcatattccat 326  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||       |||||||||||||  |||| |||||| | | ||| |||  ||||    
T  1754955 tttcccatctttacaatttgataagatacctagtttacaaaaatgtctc-------ctaaactatgtca--ctctcttttgtatgaaatttatagcccat 1754865  T
Q  327 tcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    | |||| ||| ||||| | ||  |||||||||||||||||| |||||||||||||||||    
T  1754864 ttaagctagaagttatattttcgaagacatcttctgtgcaaagaatggtgaggccaccc 1754806  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 1756706 - 1756779
Alignment:
Q  312 agattcatattccattcaagcgagatgttatgtgttgaaagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||||||||  |||||||||| ||| || || ||||| ||| ||||||| ||||||||||||||||||||||||    
T  1756706 agattcatagcccattcaagcaagaggtaatatgttggaaggcatcttcggtgcaaggaatggtgaggccaccc 1756779  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 385
Target Start/End: Complemental strand, 50910113 - 50910078
Alignment:
Q  350 aagacatcttctgtgcaaggaatggtgaggccaccc 385  Q
    ||||||||||||||||||||||| ||||||||||||    
T  50910113 aagacatcttctgtgcaaggaattgtgaggccaccc 50910078  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 48840702 - 48840734
Alignment:
Q  353 acatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||||||||||||||||||| ||||||||||||    
T  48840702 acatcttctgtgcaaggaattgtgaggccaccc 48840734  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 55084936 - 55084904
Alignment:
Q  353 acatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||||||||||||||||||| ||||||||||||    
T  55084936 acatcttctgtgcaaggaattgtgaggccaccc 55084904  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 3073719 - 3073687
Alignment:
Q  353 acatcttctgtgcaaggaatggtgaggccaccc 385  Q
    |||||||||||||||||||| ||||||||||||    
T  3073719 acatcttctgtgcaaggaattgtgaggccaccc 3073687  T

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