View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1348_high_53 (Length: 333)
Name: NF1348_high_53
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_53 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 1357277 - 1356974
Alignment:
| Q |
1 |
tatttctccctctgaatattcttctctgtttcttatccccttcttttgtacttctctgcaactttagtattttaatcaaattatcttgtaatgcttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357277 |
tatttctccctctgaatattcttctctgtttcttatccccttcttttgtacttctctgcaactttagtattttaatcaaattatcttgtaatgcttcatt |
1357178 |
T |
|
| Q |
101 |
gcaatcaataaatgatacaaaatattcaattcttaatcatttagctgagaaattgttactcttaaagggtcaaacccttacagattcctttgaaacgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1357177 |
gcaatcaataaatgatacaaaatattcaattcttaatcatttagctgagaaattgttactcttaaagggtcaaacccttacagattcctttgaaacaaaa |
1357078 |
T |
|
| Q |
201 |
gcagatatttcatcctttctcatcataatcactgaattcacaaaagtgaactgaaaacaaggaacagtaaatatgtggatactgactttgcaaatattct |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1357077 |
gcagatatttcatcccttctcatcataatcactgaattcacaaaagtgaactga--------------aaatatgtggatactgactttgcaaatattct |
1356992 |
T |
|
| Q |
301 |
tctcttttttgctgcaac |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1356991 |
tctcttttttgctgcaac |
1356974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 1352279 - 1352157
Alignment:
| Q |
201 |
gcagatatttcatcctttctcatcataatcactgaattcacaaaagtgaactgaaaacaaggaacagtaaatat-----gtggatactgactttgcaaat |
295 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |
|
|
| T |
1352279 |
gcagatatttcatctcttctcatcataataactgaattcacaaaagtgaactgaaaacaaggaacagtaaatattagtagtagatactgactttacaaat |
1352180 |
T |
|
| Q |
296 |
attcttctcttttttgctgcaac |
318 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1352179 |
attcttctcttttttgctgcaac |
1352157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 36717324 - 36717201
Alignment:
| Q |
201 |
gcagatatttcatcctttctcatcataatcactga----attcacaaaagtgaactgaaaacaaggaacagtaaatat--gtggatactgactttgcaaa |
294 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
36717324 |
gcagatatttcatcccttctcatcataataactgactgaattcacaaaagtgaactgaaaacaaggaacagcgaatattagtagatactgactttgcaaa |
36717225 |
T |
|
| Q |
295 |
tattcttctcttttttgctgcaac |
318 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
36717224 |
tattcttctcttttttggtgcaac |
36717201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 28034725 - 28034679
Alignment:
| Q |
73 |
taatcaaattatcttgtaatgcttcattgcaatcaataaatgatacaa |
120 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28034725 |
taatcaaattatcttgtaatgctt-attgcaatcaataaatgatacaa |
28034679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 44146681 - 44146641
Alignment:
| Q |
75 |
atcaaattatcttgtaatgcttcattgcaatcaataaatga |
115 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||||||||| |
|
|
| T |
44146681 |
atcaacttatcttgtaatgtttcaatgcaatcaataaatga |
44146641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University