View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_54 (Length: 326)
Name: NF1348_high_54
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 47 - 321
Target Start/End: Original strand, 47678881 - 47679153
Alignment:
| Q |
47 |
gttggttccattattctttttcttttggggggtaaacttccagcattttgttattcaaagtgaaatacgtaccagtactatttattccttgaccatgctg |
146 |
Q |
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| T |
47678881 |
gttggtttcattattctttttcttttggggggtaaacttccagcattttgttattcaaagtgaaatacgtaccagtactatttattccttgaccatgctg |
47678980 |
T |
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| Q |
147 |
ttagatgtagggttataaaactgggattttcacgtgtatagtattctggttgtcgtttatgttaaaacacaaaatacaaacaattttaagtttcaaaaat |
246 |
Q |
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| T |
47678981 |
ttagatgtagggttataaaactgggattttcacgtgtatagtattctggttgttgtttatgttaaaaca-aaaataaaaacaattttaagtttcaaaaat |
47679079 |
T |
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| Q |
247 |
attaataatcacatcgatcaataatannnnnnnaaggaagcatctctatttagaaggtcaacaatctgtggtgct |
321 |
Q |
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| T |
47679080 |
attaataatcacatcgatcaataata-ttttttaaggaagcatctctatttagaaggtcaacaacctgtgatgct |
47679153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 7971362 - 7971319
Alignment:
| Q |
7 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttg |
50 |
Q |
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| T |
7971362 |
tgcaggatctgtctttaatttctttaatgcacttggctctgttg |
7971319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 8042351 - 8042394
Alignment:
| Q |
7 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttg |
50 |
Q |
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| T |
8042351 |
tgcaggatctgtcttttatttctttaatgcacttggctctgttg |
8042394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 41381799 - 41381767
Alignment:
| Q |
7 |
tgcaggatctgtctttgatttctttaatgcact |
39 |
Q |
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| T |
41381799 |
tgcaggatctgtctttaatttctttaatgcact |
41381767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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