View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_56 (Length: 317)
Name: NF1348_high_56
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 151 - 307
Target Start/End: Complemental strand, 1357406 - 1357250
Alignment:
| Q |
151 |
atctagttagtgtaaagagacacgtgtcacttgatccaataattaaggataaattgctaacagaaatggatataaaaggagaaaggatgaattatgggaa |
250 |
Q |
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| T |
1357406 |
atctagttagtgtaaagagacacgtgtcacttgatccaataattaaggataaattgctaacagaaatggatataaaaggagaaaggatgaattatgggaa |
1357307 |
T |
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| Q |
251 |
ggcatgaaaataatatggattgaagtctctatttctccctctgaatattcttctctg |
307 |
Q |
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| T |
1357306 |
ggcatgaaaataatatggattgaagtctctatttctccctctgaatattcttctctg |
1357250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 1352413 - 1352319
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc |
118 |
Q |
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| T |
1352413 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc |
1352319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 2041244 - 2041338
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc |
118 |
Q |
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| T |
2041244 |
taacatctccaaggtattttacattatcaatacctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc |
2041338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 1357534 - 1357444
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacagg |
114 |
Q |
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| T |
1357534 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaacatgtttgatcctttctcttcatcataacagg |
1357444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 1364364 - 1364328
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagcttt |
60 |
Q |
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| T |
1364364 |
taacatctccaaggtattttacattatcaatagcttt |
1364328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 36717446 - 36717352
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcataacaggattc |
118 |
Q |
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| T |
36717446 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaagatgtttgatcctttctcttcatcataacaggattc |
36717352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 24620546 - 24620630
Alignment:
| Q |
24 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaaggtgtttgatcctttcttttcatcat |
108 |
Q |
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| T |
24620546 |
taacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaaccaaatatgtttgatcctttctcttcatcat |
24620630 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 15435066 - 15434983
Alignment:
| Q |
204 |
ttgctaacagaaatggatataaaaggagaaaggatgaattatgggaag-gcatgaaaataatatggattgaagtctctatttctccc |
289 |
Q |
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| T |
15435066 |
ttgctaagagaaatggatataaa-ggagaaagtctgaatgatgtgaggagcatgaaaataat--ggattgaagtctctatttctccc |
15434983 |
T |
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