View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_6 (Length: 653)
Name: NF1348_high_6
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 6e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 115 - 329
Target Start/End: Complemental strand, 37248992 - 37248789
Alignment:
| Q |
115 |
ccctctgattgcaaacctcagaccggcatgatatggttgttaatttctttgactaaattaaactcatttcaagaggaaacaataacacagttagataaga |
214 |
Q |
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| T |
37248992 |
ccctctgattgaaaacctcagaccggcatgatgtggatgttaatttctttgactaaattaaactcatttcaagaggaaacaataacacagttagataaga |
37248893 |
T |
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| Q |
215 |
tttgacccaaactaaaacatttcattaattaaactgatgattaccacaaacattgaaaatctagacacatcaaaaactaatcaaaagacagaggtacgct |
314 |
Q |
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| T |
37248892 |
tttgacccaaactaaaacatttcattaattaaactgatgattaccacaaacattgaaaatctagacacatc-----------aaaagacagaggtacgct |
37248804 |
T |
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| Q |
315 |
agatccgatatcaga |
329 |
Q |
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| T |
37248803 |
agatccgatatcaga |
37248789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 380 - 461
Target Start/End: Complemental strand, 37239050 - 37238969
Alignment:
| Q |
380 |
gcagacactttaatttattagaccccattacattattataaaaccatagatcaacctagagcttcaaatcatggtcgatatc |
461 |
Q |
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| T |
37239050 |
gcagacaccttaatttattagaccccattacattattataaaaccatagatcaacctagagcttcaaatcatggtcgatatc |
37238969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 384 - 461
Target Start/End: Complemental strand, 37248734 - 37248657
Alignment:
| Q |
384 |
acactttaatttattagaccccattacattattataaaaccatagatcaacctagagcttcaaatcatggtcgatatc |
461 |
Q |
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| T |
37248734 |
acactttaatttattagaccccattacattattataaaaccatagatcaacctagagcttcaaatcatggtcgatatc |
37248657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 539
Target Start/End: Complemental strand, 37238939 - 37238891
Alignment:
| Q |
491 |
tgcttcctatttcaaacaaactatcaacccacaccactggtcgttcctc |
539 |
Q |
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| T |
37238939 |
tgcttcctatttcaaacatactatcaccccacaccatcggtcgttcctc |
37238891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 539
Target Start/End: Complemental strand, 37248627 - 37248579
Alignment:
| Q |
491 |
tgcttcctatttcaaacaaactatcaacccacaccactggtcgttcctc |
539 |
Q |
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| T |
37248627 |
tgcttcctatttcaaacatactatcaccccacaccatcggtcgttcctc |
37248579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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