View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_62 (Length: 276)
Name: NF1348_high_62
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_62 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 1530130 - 1530396
Alignment:
| Q |
1 |
gtatgcttgatgataatttgctgtattctattgagtggtgaaatggttattgattattgagatgttagttatttttagctgtatataatttgtgtttttt |
100 |
Q |
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| T |
1530130 |
gtatgcttgatgataatttgctggattctattgagtggtgaaatggtgattgattattgagatgttagttatttttagctgtatataatttgtgtttttt |
1530229 |
T |
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| Q |
101 |
ggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggattt |
200 |
Q |
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| T |
1530230 |
ggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggattt |
1530329 |
T |
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| Q |
201 |
gcagaataatatgcactattcttatatttatgttcatttcaatttggcctaatttttgcagaataat |
267 |
Q |
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| T |
1530330 |
gcagaataatatgcactattcttatatttatgttcatttcaatttggcctaatttttgcagaataat |
1530396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 22476586 - 22476322
Alignment:
| Q |
1 |
gtatgcttgatgataatttgctgtattct-attgagtggtgaaatggttattgattattgagatgttagttatttttagctgtatataatttgtgttttt |
99 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
22476586 |
gtatgcttgatgataatttgctggattcttattgagtggtgaaatggtgattggttattgagatgttagttatttttagttgtatataatttttgttttt |
22476487 |
T |
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| Q |
100 |
t-ggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggat |
198 |
Q |
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| T |
22476486 |
ttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggat |
22476387 |
T |
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| Q |
199 |
ttgcagaataatatgcactattcttatatttatgttcatttcaatttggcctaatttttgcagaa |
263 |
Q |
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| T |
22476386 |
ttgcagaataatatgcactattcttatatttatgttcatttcaatttggcctaatttttgcagaa |
22476322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 26841904 - 26842174
Alignment:
| Q |
1 |
gtatgcttgatgataatttgctgtattct-attgagtggtgaaatggttattgattattgagatgttagttatttttagctgtatataatttgtgttttt |
99 |
Q |
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| T |
26841904 |
gtatgcttgatgataatttgctagattcttattgagtggtgaaatggtgattgattattgagatgttagttatttttagttgtatataatctgtgttttt |
26842003 |
T |
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| Q |
100 |
tggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatggatt |
199 |
Q |
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| T |
26842004 |
tggaaattggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattgtgaattagttaggatggatt |
26842103 |
T |
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| Q |
200 |
tgcagaataatatgcacta---ttcttatatttatgttcatttcaatttggcctaatttttgcagaataat |
267 |
Q |
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| T |
26842104 |
tgcagaataatatgcactattcttcttatatttatgttcatttcaatttggcctaatttttgcagaataat |
26842174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 29099213 - 29099432
Alignment:
| Q |
2 |
tatgcttgatgataatttgctgtattc-tattgagtggtgaaatggttattgattattgagatgttagttatttttagctgtatataattt-----gtgt |
95 |
Q |
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||||||||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||| |
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| T |
29099213 |
tatgcttgatgatggtttgctggattcatattgagtggtgaaatggtgattgattattgagatgttagttacttttagctgtatataatataatctgtgt |
29099312 |
T |
|
| Q |
96 |
tttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgttggaggaatagattgtttgattaattatgaattagttaggatg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||| ||||||||||||||| |
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| T |
29099313 |
tttttggaatttggtatttgattgatatgtactggtttgaaaagtagtgttttttgtctgtggaagagattgcttgattaattaggaattagttaggatg |
29099412 |
T |
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| Q |
196 |
gatttgcagaataatatgca |
215 |
Q |
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| T |
29099413 |
gatttgcagaataatatgca |
29099432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 21923094 - 21923182
Alignment:
| Q |
2 |
tatgcttgatgataatttgctgtattct-attgagtggtgaaatggttattgattattgagatgttagttatttttagctgtatataat |
89 |
Q |
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||||||||||||||||||| || ||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21923094 |
tatgcttgatgataatttgttggattcttattgagtggtgaaatggtgattaattattgagatgttagttatttttagctgtatataat |
21923182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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