View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_68 (Length: 262)
Name: NF1348_high_68
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 27887237 - 27886985
Alignment:
| Q |
1 |
gcaagaaataatgtaaattcaattcaacnnnnnnnnn-tgtaaattcaatatataacagtaaaggtttggctattaaaaataaggaaggaacacacctgc |
99 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27887237 |
gcaagaaataatgtaaattcaattcaacaaaaaaaaaatgtaaattcaatatataacagtaaaggtttggctattaaaaataaggaaggaacacacctgc |
27887138 |
T |
|
| Q |
100 |
aattttttcaagtggtaagaggcttgtgctgtgtgcatcttaagtaagtcacaggtttgattattagctcttatgtaaaaaatattaaggatccaaggat |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27887137 |
aattttttcaagtggtaagaggcttgtgttgtgtgcatcttaagtaagtcacaggtttgattattagctcttatgtaaaaaatattgaggatccaaggat |
27887038 |
T |
|
| Q |
200 |
acaagacactcaaaggataaaaacacaagtatcagctacgatcacgagtatta |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27887037 |
acaagacactcaaaggataaaaacacaagtatcagctacaatcacgagtatta |
27886985 |
T |
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