View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_7 (Length: 607)
Name: NF1348_high_7
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 30 - 456
Target Start/End: Complemental strand, 48011394 - 48010959
Alignment:
| Q |
30 |
gaaaatcctcataccaagaagaaaaattcggttttttacaaccacctctctcaaaaaatgatcttcaaggcaacaagtaagttgatattattttgtgcat |
129 |
Q |
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| T |
48011394 |
gaaaatcatcataccaagaagaaaaattcggttttttacaaccacctctctcaaaaaatgatcttcaaggcaacaagtaagttgatattattttgtgcat |
48011295 |
T |
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| Q |
130 |
tagaagaaaattttaccagacatagt---gtgttcagctt-aatgatttgcattctttgtttagcagctggtatggaggaaaaaatcagttccattaatg |
225 |
Q |
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| T |
48011294 |
tagaagaaaattttactagacatagtagtgtgttcagctttaatgatttgcattctttgtttagcagctggtatggaggaaaaaatcagttctattaatg |
48011195 |
T |
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| Q |
226 |
gctacctctgctattgaagttgttgcagtggatgtta----ctcaagattaatgaaggaatttaattcttcttttcctttttactttgtcaattcagtgg |
321 |
Q |
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| T |
48011194 |
gctgcctctgctattgaagttgttgcagtggatgttaattactcaagattaatgaaggaatttaattcttcttttcctttttactttgtcaattcagtgg |
48011095 |
T |
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| Q |
322 |
aagttattgaaaagagcaagttagtcatttgtttctactttagaaaatgtaattttgttg-ttaatcaatggtgattacaagctagtttagttaggaagt |
420 |
Q |
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| T |
48011094 |
aagttactgaaaagagcaagttagtcatttgtttctactttagaaaatgtaattttgttgtttaatcaatggtgattacaagctaatttagttaggaagt |
48010995 |
T |
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| Q |
421 |
atgtttacttcttgttattttgatgaatctacatag |
456 |
Q |
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| T |
48010994 |
atgtttacttcttgttattttgatgaatctacatag |
48010959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 555 - 607
Target Start/End: Complemental strand, 48010840 - 48010788
Alignment:
| Q |
555 |
tactgctagctgtgtgcatgctttcagattataaaattgttttaatcgatttt |
607 |
Q |
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| T |
48010840 |
tactgctagctgtgtgcatgctttcagattataaaattgttctaatagatttt |
48010788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 40503017 - 40502938
Alignment:
| Q |
59 |
ggttttttacaaccacctctctca-aaaaatgatcttcaaggcaacaagtaagttgatattattttgtgcattagaagaa |
137 |
Q |
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| T |
40503017 |
ggtttattacaaccatctctatcagaaaaataaacttcaaggcaacaagttagttcatcttcttttgtgcattagtagaa |
40502938 |
T |
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