View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_71 (Length: 256)
Name: NF1348_high_71
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_71 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 27887237 - 27887081
Alignment:
| Q |
1 |
gcaagaaataatgtaaattcaattcaacnnnnnnnnn-tgtaaattcaatatataacagtaaaggtttggctattaaaaataaggaaggaacacacctgc |
99 |
Q |
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| T |
27887237 |
gcaagaaataatgtaaattcaattcaacaaaaaaaaaatgtaaattcaatatataacagtaaaggtttggctattaaaaataaggaaggaacacacctgc |
27887138 |
T |
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| Q |
100 |
aattttttcaagtggtaagaggcttgtgctgtgtgcatcttaagtaagtcacaggtt |
156 |
Q |
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| T |
27887137 |
aattttttcaagtggtaagaggcttgtgttgtgtgcatcttaagtaagtcacaggtt |
27887081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 2327991 - 2327906
Alignment:
| Q |
173 |
aaaaaatatgcataatccatatggtataagatactat--gaacctaaaataattttcatgtcttagttaggacaccagaaactctt |
256 |
Q |
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| T |
2327991 |
aaaaaatatgcataatccatatggtataagatactatatgaacctaaaataattttcatgtctcagttaggacaccagaaactctt |
2327906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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