View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_72 (Length: 255)
Name: NF1348_high_72
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_72 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold1543 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 21590305 - 21590530
Alignment:
| Q |
30 |
ttgagaatatcaagcagctgggatctcacctctctagcctttcttagacctttaacatgcaaaaaatggtcattgcaccaatcacctctgtaatcatgtt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21590305 |
ttgagaatatcaagcagctgggatctcacctctctagcctttcttagacctttaacatgcaaaaaatggtcattgcaccaatcacctctgtaatcatgtt |
21590404 |
T |
|
| Q |
130 |
gtttccattgctgatagacattgtaaagcgttaaatgatcagattctggcacaaaaaatctttcatgtgcagcttcactctcatctgctcggtcctttgg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
21590405 |
gtttccattgctgatagacattgtaaagcgttaaatgatcagattctggcacaaaaaatctttcgcgtgcagcatcactctccgctgctcggtcctttgg |
21590504 |
T |
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| Q |
230 |
cctaaagaaaacagatggtactgaaa |
255 |
Q |
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|||||||||||||||||||||||||| |
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| T |
21590505 |
cctaaagaaaacagatggtactgaaa |
21590530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 21624510 - 21624732
Alignment:
| Q |
33 |
agaatatcaagcagctgggatctcacctctctagcctttcttagacctttaacatgcaaaaaatggtcattgcaccaatcacctctgtaatcatgttgtt |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21624510 |
agaatatcaagcagctgggatctcacctctctagcctttcttagacctttaacttgcaaaaaatggtcattgcaccaatcacctctgtaataatgttgtt |
21624609 |
T |
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| Q |
133 |
tccattgctgatagacattgtaaagcgttaaatgatcagattctggcacaaaaaatctttcatgtgcagcttcactctcatctgctcggtcctttggcct |
232 |
Q |
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| T |
21624610 |
tccattgctgatagacattgtaaagggttaaatgatcagattctggcacaaaaaatctttcgcgtgcagcatcactctcctctgctcggtcctttggcct |
21624709 |
T |
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| Q |
233 |
aaagaaaacagatggtactgaaa |
255 |
Q |
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||||||||||||||||||||||| |
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| T |
21624710 |
aaagaaaacagatggtactgaaa |
21624732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 31 - 255
Target Start/End: Original strand, 21598350 - 21598573
Alignment:
| Q |
31 |
tgagaatatcaagcagctgggatctcacctctctagcctttcttagacctttaacatgcaaaaaatggtcattgcaccaatcacctctgtaatcatgttg |
130 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21598350 |
tgagaatatcaagcagctgggacatcacctctctagcctttcttagacctttaacttg-aaaaaatggtcattgcaccaatcacctctgtaatcatgttg |
21598448 |
T |
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| Q |
131 |
tttccattgctgatagacattgtaaagcgttaaatgatcagattctggcacaaaaaatctttcatgtgcagcttcactctcatctgctcggtcctttggc |
230 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |
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| T |
21598449 |
tttccattgctgatagacattgtaaagggttaaatgatcagattctggcacaaaaaatctttcgcgtgcagcatcactctcctctgctcggtcctttggc |
21598548 |
T |
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| Q |
231 |
ctaaagaaaacagatggtactgaaa |
255 |
Q |
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||||||||||||||||||||||||| |
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| T |
21598549 |
ctaaagaaaacagatggtactgaaa |
21598573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 42100578 - 42100353
Alignment:
| Q |
30 |
ttgagaatatcaagcagctgggatctcacctctctagcctttcttagacctttaacatgcaaaaaatggtcattgcaccaatcacctctgtaatcatgtt |
129 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42100578 |
ttgagaatatcaagcagctgggatctaacctctctagcctttcttagacctttaacatgcaaaaaatggtcattgcaccaatcacctctgtaatcatgtt |
42100479 |
T |
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| Q |
130 |
gtttccattgctgatagacattgtaaagcgttaaatgatcagattctggcacaaaaaatctttcatgtgcagcttcactctcatctgctcggtcctttgg |
229 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |
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| T |
42100478 |
gtttccattgctgatagacattgtaaagggttaaatgatcggattctggcacaaaaaatctttcacgtgcagcatcactctcctctgctcggtcctttgg |
42100379 |
T |
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| Q |
230 |
cctaaagaaaacagatggtactgaaa |
255 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42100378 |
cctaaagaaaacagatggtactgaaa |
42100353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1543 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold1543
Description:
Target: scaffold1543; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 31 - 255
Target Start/End: Original strand, 268 - 491
Alignment:
| Q |
31 |
tgagaatatcaagcagctgggatctcacctctctagcctttcttagacctttaacatgcaaaaaatggtcattgcaccaatcacctctgtaatcatgttg |
130 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
268 |
tgagaatatcaagcagctgggacatcacctctctagcctttcttagacctttaacttg-aaaaaatggtcattgcaccaatcacctctgtaatcatgttg |
366 |
T |
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| Q |
131 |
tttccattgctgatagacattgtaaagcgttaaatgatcagattctggcacaaaaaatctttcatgtgcagcttcactctcatctgctcggtcctttggc |
230 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |
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| T |
367 |
tttccattgctgatagacattgtaaagggttaaatgatcagattctggcacaaaaaatctttcgcgtgcagcatcactctcctctgctcggtcctttggc |
466 |
T |
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| Q |
231 |
ctaaagaaaacagatggtactgaaa |
255 |
Q |
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||||||||||||||||||||||||| |
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| T |
467 |
ctaaagaaaacagatggtactgaaa |
491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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