View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_high_75 (Length: 251)
Name: NF1348_high_75
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_75 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 28321328 - 28321569
Alignment:
| Q |
10 |
ataattctcattcatttgtaaatattctgctgcacatcttagactaaccacatttaatggtgtgatttctagttttacaccatagcaaaactttgttatg |
109 |
Q |
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| T |
28321328 |
ataattctcattcatttgtaaatattctgctgcacatcttagactaaccacatttaatggtgtgatttctagttttacaccatagcaaaactttgttatg |
28321427 |
T |
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| Q |
110 |
atctcaaatgttttgtctccaccaggtacatcatgaagttgtaaaatagaatttgatccatcttcatttgtggagtcagcaaaaagtttctttagtaatc |
209 |
Q |
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| T |
28321428 |
atctcaaatgttttgtctccaccaggtacatcatgaagttgtaaaatagaatttgatccatcttcatttgtggagtcagcaaaaagtttctttagtaatc |
28321527 |
T |
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| Q |
210 |
cacttctagaaagcaatggaaactacaatatcaaaatcaaaa |
251 |
Q |
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| T |
28321528 |
cacttctagagagcaatggaaactacaatatcaaaatcaaaa |
28321569 |
T |
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Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 5949566 - 5949368
Alignment:
| Q |
35 |
tctgctgcacatcttagactaaccacatttaatggtgtgatttctagttttacaccatagcaaaactttgttatgatctcaaatgttttgtctccaccag |
134 |
Q |
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| T |
5949566 |
tctgctgcacatcttagactaactacattcaatgctgtgatttctaatttcacaccatagcaaaattttgttatgagctcaaatgttttggctccaccag |
5949467 |
T |
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| Q |
135 |
gtacatcatgaagttgtaaaatagaatttgatccatcttcatttgtggagtcagcaaaaagtttctttagtaatccacttctagaaagcaatggaaact |
233 |
Q |
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| T |
5949466 |
gaacatcatgaagttgcaaaatactacttgatccatcctcacttgtggactctgcaattagtttctttagtagtccacttctagaaagtaatggaaact |
5949368 |
T |
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