View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1348_high_8 (Length: 599)
Name: NF1348_high_8
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 43297396 - 43296831
Alignment:
| Q |
1 |
gcgagccgagatgtggactgttgtttgattcccgagtcacccttttacctcgagggacctggtggacttctggagttcatcgagaaaagactgagagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43297396 |
gcgagccgagatgtggactgttgtttgattcctgagtcacccttttacctcgagggacctggtggacttctggagttcattgagaaaagactgagagaac |
43297297 |
T |
|
| Q |
101 |
aaggacacatggttatagtaatagctgaaggtgcaggtcaggagctaattcctcgtaatgacacatctaataagaataagcccgatgcttcttctgatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43297296 |
aaggacacatggttatagtaatagctgaaggtgcaggtcaggagctaattcctcgtaatgacacatctaataagaataagcccgatgcttctcctgatga |
43297197 |
T |
|
| Q |
201 |
cttggttcaggatgtcggtctgtggttatctcagaaaattaaggtaaaaagt-acaaagttttcccttactgttatggtcaatgtgnnnnnnnnnnnnct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
43297196 |
cttggttcaggatgtcggtctgtggttatctcagaaaattaaggtaaaaagtcacaaagttttcccttactgttatggtcaatgtgttttttctttttct |
43297097 |
T |
|
| Q |
300 |
tgcacgataatcctaagaatctaagttaaaatcatgcttatacgaaaaagtcgttcaatttaattagtaaattttcaagctgtaggattttcttttagtt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43297096 |
tgcacgataatcctaagaatctaagttaaaatcatgcttatacgaaaaagtcgttcaatttaattag-----tttcaagctgtaggattttcttttagtt |
43297002 |
T |
|
| Q |
400 |
ttgttacatttaaacgtttgtttctattgtaggatcactttgaaagaagtnnnnnnnttataaatctgaagtacatcggtgagttctctatttagaactg |
499 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43297001 |
ttgttacttttaaacgtttgtttctattgtaggatcactttgaaagaagtaaaaaaattataaatctgaagtacatcggtgagttctctatttagaactg |
43296902 |
T |
|
| Q |
500 |
tatatgtttactcattaaaagaagaaagtgctgtgaactnnnnnnnntattgtattgcagatcctacttac |
570 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43296901 |
tatatgtttactcattaaaagaagaaaatgctgtgaactaaaaaaaatattgtattgcagatcctacttac |
43296831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 43281279 - 43281029
Alignment:
| Q |
4 |
agccgagatgtggactgttgtttgattcccgagtcacccttttacctcgagggacctggtggacttctggag----ttcatcgagaaaagactgagagaa |
99 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| |||||||| || ||||| ||||| || | ||| ||||| |||||||| ||| | || |
|
|
| T |
43281279 |
agccgagatgtggattgctgtttgattccagagtcaccattttaccttgaaggaccaggtgggctattagaggtcattcattcagaaaagattgaaaaaa |
43281180 |
T |
|
| Q |
100 |
caaggacacatggttatagtaatagctgaaggtgcaggtcaggagctaattcctcgtaatgacacatctaataagaataagcccgatgcttcttctgatg |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| || | | |
|
|
| T |
43281179 |
caaggacatatggttatagtaatagctgaaggtgcaggtcaggagctaattccttctaatgacacatctattaagaataagccagatgcttcatcgaacg |
43281080 |
T |
|
| Q |
200 |
acttggttcaggatgtcggtctgtggttatctcagaaaattaaggtaaaaa |
250 |
Q |
| |
|
||||| |||| ||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
43281079 |
acttgtttcaagatgttgatctgtggttatctcagaaaagtaaggtaaaaa |
43281029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 441
Target Start/End: Complemental strand, 43280970 - 43280867
Alignment:
| Q |
337 |
ttatacgaaaaagtcgttcaatttaattagtaaattttcaagctgtaggattttcttttagttttgttacatttaaacgtttgtttctattgtaggatca |
436 |
Q |
| |
|
|||||| ||||||| || |||||||| |||| ||||||| |||||| |||||| |||||||| ||| ||||| | |||||||||| ||||||||||| |
|
|
| T |
43280970 |
ttatacaaaaaagtaatttaatttaatcagtagattttcatgctgtaaaattttcaattagtttt-ttatatttagatgtttgtttctgttgtaggatca |
43280872 |
T |
|
| Q |
437 |
ctttg |
441 |
Q |
| |
|
|||| |
|
|
| T |
43280871 |
ttttg |
43280867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 34227489 - 34227550
Alignment:
| Q |
8 |
gagatgtggactgttgtttgattcccgagtcacccttttacctcgagggacctggtggactt |
69 |
Q |
| |
|
||||||| |||||||| |||||||| ||||| || ||||||||||| || |||||||||||| |
|
|
| T |
34227489 |
gagatgttgactgttgcttgattccggagtcgccgttttacctcgaaggtcctggtggactt |
34227550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 51585260 - 51585302
Alignment:
| Q |
8 |
gagatgtggactgttgtttgattcccgagtcacccttttacct |
50 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
51585260 |
gagatgtggactgttgcttgattccagagtcacccttctacct |
51585302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University