View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348_low_1 (Length: 972)

Name: NF1348_low_1
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348_low_1
NF1348_low_1
[»] chr5 (22 HSPs)
chr5 (29-616)||(37385866-37386453)
chr5 (670-962)||(37386507-37386799)
chr5 (254-616)||(37441063-37441424)
chr5 (81-250)||(37216707-37216876)
chr5 (792-920)||(37440785-37440913)
chr5 (83-235)||(37222727-37222879)
chr5 (81-250)||(37231629-37231798)
chr5 (88-220)||(37197687-37197819)
chr5 (670-750)||(37440930-37441009)
chr5 (411-616)||(37222140-37222338)
chr5 (107-222)||(37202620-37202735)
chr5 (411-479)||(37227686-37227754)
chr5 (274-340)||(37216435-37216501)
chr5 (274-332)||(37227881-37227939)
chr5 (254-332)||(37231373-37231451)
chr5 (411-506)||(37216221-37216313)
chr5 (728-776)||(35135734-35135782)
chr5 (729-777)||(37063145-37063193)
chr5 (274-393)||(37222397-37222525)
chr5 (411-479)||(37231178-37231246)
chr5 (928-966)||(37221676-37221714)
chr5 (928-966)||(37440724-37440762)
[»] chr1 (1 HSPs)
chr1 (729-776)||(29007788-29007835)
[»] chr4 (2 HSPs)
chr4 (730-782)||(22471283-22471335)
chr4 (729-777)||(27406002-27406050)
[»] chr2 (1 HSPs)
chr2 (729-776)||(17952773-17952820)
[»] scaffold0590 (1 HSPs)
scaffold0590 (729-783)||(1139-1193)
[»] scaffold0275 (1 HSPs)
scaffold0275 (729-783)||(2782-2836)
[»] chr8 (1 HSPs)
chr8 (729-775)||(27728094-27728140)
[»] chr7 (1 HSPs)
chr7 (731-772)||(503402-503443)
[»] chr6 (1 HSPs)
chr6 (731-776)||(27595639-27595684)


Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 29 - 616
Target Start/End: Original strand, 37385866 - 37386453
Alignment:
Q  29 attatcttcctatttaaacctttcatatgcaacttttctttcaaatgatcaatgcaaagtaaaactaacaatgctatgataacaaaccttgcctctcggc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37385866 attatcttcctatttaaacctttcatatgcaacttttctttcaaatgatcaatgcaaagtaaaactaacaatgctatgataacaaaccttgcctctcggc 37385965  T
Q  129 tctccatagtagacttcaccaaaaccaccttgaccaattttgttagccaagctgaagttatcagtagcattggctagttcttcgtacgaaaatttaggtg 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  37385966 tctccatagtagacttcaccaaaaccaccttgaccaattttgttagccaagctgaatttatcagtagcattggctagttcttcgtatgaaaatttaggtg 37386065  T
Q  229 atttgtccaccacaatatattttgatggcaatttagtttcctttgcattcttatttcgaaagtatatagcatatatactaattgctaataacagaaccat 328  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37386066 atttgtccaccacaatatattttgatggcaatttagactcctttgcattcttatttcgaaagtatatagcatatatactaattgctaataacagaaccgt 37386165  T
Q  329 gcatgttcctccgacagcagtagctaaactcctagctaaatgacctgcttatatagatagaaattcaagctcagagacatgccaaaaataaatagtcatc 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37386166 gcatgttcctccgacagcagtagctaaactcctagctaaatgacctgcttatatagatagaaatttaagctcagagacatgccaaaaataaatagtcatc 37386265  T
Q  429 aacatggccgattctatgatatgtttgaaggccaaacctgcttttctgcaaaagagaaaaggaaatataaataatgataatcgaacaaaacataaatgaa 528  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37386266 aacatggccgattctatcatatgtttgaaggccaaacctgcttttctgcaaaagagaaaaggaaatataaataatgataatcgaacaaaacataaatgaa 37386365  T
Q  529 tgttcattgttttgagctctgagcatgaagggtaacttattaaaacttacccgtggggcaagggaacataaactccatttttatctgc 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37386366 tgttcattgttttgagctctgagcatgaagggtaacttattaaaacttacccgtggggcaagggaacataaactccatttttatctgc 37386453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 670 - 962
Target Start/End: Original strand, 37386507 - 37386799
Alignment:
Q  670 gtcaaacattaacgctttgtttggataaacaactcaatgaaacgcttaccacattagtatatttctataataaaagaaaaattaaaggcaaactattttc 769  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37386507 gtcaaacattaacgctttgtttggataaacaactcaatgaaacgcttaccacattagtatatttctataataaaagaaaaattaaaggcaaactattttc 37386606  T
Q  770 atataagtcataaacaacttgttaacttattgtaagttcatttcataagctctctacagtctcacaagtagataaactcagataagtcaattcaaagagg 869  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37386607 atataagtcataaacaacttgttaacttattgtaagttcatttcataagctctctacagtctcacaagtagataaactcagataagtcaattcaaacagg 37386706  T
Q  870 tctgaaatacttttttgacaaattttgaaattcaaaatatcgaaactcaaaaaatctgacctttccctggaataaaaactagcccacttcctt 962  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37386707 tctgaaatacttttttgacaaattttgaaattcaaaatatcgaaactcaaaaaatctgacctttccctggaataaaaaccagcccacttcctt 37386799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 254 - 616
Target Start/End: Complemental strand, 37441424 - 37441063
Alignment:
Q  254 tggcaatttagtttcctttgcattcttatttcgaaagtatatagcatatatactaattgctaataacagaaccatgcatgttcctccgacagcagtagct 353  Q
    ||||||||||| ||||| ||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||    
T  37441424 tggcaatttagattcctctgcattctt-tttcgaaagtatctagtatatatacaaattgctaataacagaaccatgcatattcctccgataacagtagct 37441326  T
Q  354 aaactcctagctaaatgacctgcttatatagatagaaattcaagctca--gagacatgccaaaaataaatagtcatcaacatggccgattctatgatatg 451  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||| ||||||  ||||| ||||| |||||| |||||||    
T  37441325 aaactcctagctaaatgacctgcttatatagatagaaatttaagctcagagagacatgccaaaaacaaataggaatcaatatggctgattctctgatatg 37441226  T
Q  452 tttgaaggccaaacctgcttttctgcaaaagagaaaaggaaatataaataatgataatcgaacaaaacataaatgaatgttcattgttttgagctctgag 551  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||  |||||||||||||||| ||||| |||||    
T  37441225 tttgaaggccaaacctgcttttctgcaagagagaaaaggaaatagaaataatgattatcgaacaaaacat--atgaatgttcattgttgtgagcactgag 37441128  T
Q  552 catgaagggtaacttattaaaacttacccgtggggcaagggaacataaactccatttttatctgc 616  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37441127 catgaagggtaaccgattaaaacttactcgtggggcaagggaacataaactccatttttatctgc 37441063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 37216876 - 37216707
Alignment:
Q  81 tgcaaagtaaaactaacaatgctatgataacaaaccttgcctctcggctctccatagtagacttcaccaaaaccaccttgaccaattttgttagccaagc 180  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| |    
T  37216876 tgcaaagcaaaactaacaatgctatgattacaaacctggcctctcagctctccatagtagacctcaccaaaaccaccttgaccaatttttttagccaaac 37216777  T
Q  181 tgaagttatcagtagcattggctagttcttcgtacgaaaatttaggtgatttgtccaccacaatatattt 250  Q
    |||||||||| || |||||||||||||||||||||||||| |  |||||||| ||||||  |||||||||    
T  37216776 tgaagttatctgttgcattggctagttcttcgtacgaaaactctggtgatttatccacccaaatatattt 37216707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 792 - 920
Target Start/End: Complemental strand, 37440913 - 37440785
Alignment:
Q  792 taacttattgtaagttcatttcataagctctctacagtctcacaagtagataaactcagataagtcaattcaaagaggtctgaaatacttttttgacaaa 891  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  37440913 taacttattgtaagttcttttcataagctctctacagtctcacaagcagataaacgcagataagtcaattcaagcaggtctgaaatacttttttgacaaa 37440814  T
Q  892 ttttgaaattcaaaatatcgaaactcaaa 920  Q
    ||||||||||||||||| |||||||||||    
T  37440813 ttttgaaattcaaaataccgaaactcaaa 37440785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 37222879 - 37222727
Alignment:
Q  83 caaagtaaaactaacaatgctatgataacaaaccttgcctctcggctctccatagtagacttcaccaaaaccaccttgaccaattttgttagccaagctg 182  Q
    |||||||||||||||||||||| ||| |||||||| |||||||  ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  37222879 caaagtaaaactaacaatgctacgattacaaacctggcctctcaactctccatagtagacctcaccaaaaccaccttgaccaatttttttagccaaactg 37222780  T
Q  183 aagttatcagtagcattggctagttcttcgtacgaaaatttaggtgatttgtc 235  Q
    |||||||| ||||||||||| ||||||||||||||||| |  |||||||||||    
T  37222779 aagttatctgtagcattggcgagttcttcgtacgaaaactctggtgatttgtc 37222727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 37231798 - 37231629
Alignment:
Q  81 tgcaaagtaaaactaacaatgctatgataacaaaccttgcctctcggctctccatagtagacttcaccaaaaccaccttgaccaattttgttagccaagc 180  Q
    ||||||||||||||||||| | ||||||||||||||||||||| | || ||||||||||||| |||||||||||||||||||||||||| |||||||| |    
T  37231798 tgcaaagtaaaactaacaaagttatgataacaaaccttgcctcccagcactccatagtagacctcaccaaaaccaccttgaccaatttttttagccaaac 37231699  T
Q  181 tgaagttatcagtagcattggctagttcttcgtacgaaaatttaggtgatttgtccaccacaatatattt 250  Q
    ||||||| || ||||||||||||||| ||| ||| || || || ||||||||||||||||  ||||||||    
T  37231698 tgaagttctctgtagcattggctagtactttgtatgagaactttggtgatttgtccaccaatatatattt 37231629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 37197819 - 37197687
Alignment:
Q  88 taaaactaacaatgctatgataacaaaccttgcctctcggctctccatagtagacttcaccaaaaccaccttgaccaattttgttagccaagctgaagtt 187  Q
    |||| |||||||||||||||| |||||||| |||  || ||||| | || ||||||||||| |||||||||||||| ||||||||||||| | |||||||    
T  37197819 taaacctaacaatgctatgattacaaacctcgccattcagctctgcgtaatagacttcaccgaaaccaccttgaccgattttgttagccatgttgaagtt 37197720  T
Q  188 atcagtagcattggctagttcttcgtacgaaaa 220  Q
    ||  || ||||||||||||||||| || |||||    
T  37197719 atttgtggcattggctagttcttcatatgaaaa 37197687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 670 - 750
Target Start/End: Complemental strand, 37441009 - 37440930
Alignment:
Q  670 gtcaaacattaacgctttgtttggataaacaactcaatgaaacgcttaccacattagtatatttctataataaaagaaaaa 750  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||    
T  37441009 gtcaaacattaacgctttgtttggataaacaactcaatgaagcgcttaccacataagta-atttctatagtaaaagaaaaa 37440930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 411 - 616
Target Start/End: Complemental strand, 37222338 - 37222140
Alignment:
Q  411 caaaaataaatagtcatcaacatggccgattctatgatatgtttgaaggccaaacctgcttttctgcaaaagagaaaaggaaatataaataatgataatc 510  Q
    |||||||||||||||||||| || ||| | ||| ||||| |||||||||  ||||||   ||||||||| || |||||||||||| ||||||||||        
T  37222338 caaaaataaatagtcatcaatatagccaactctctgataagtttgaaggtgaaacct---tttctgcaagagggaaaaggaaatagaaataatgatgt-- 37222244  T
Q  511 gaacaaaacataaatgaatgttcattgttttgagctctgagcatgaagggtaacttattaaaacttacccgtggggcaagggaacataaactccattttt 610  Q
     ||| |||||||||| ||| ||||||||| |||   || || |||||| |||||  | |||||||||||   |||| ||||||||||||| ||||||||     
T  37222243 -aaccaaacataaatcaat-ttcattgttgtgaatactaagtatgaagagtaacacaataaaacttacctagggggtaagggaacataaaatccattttc 37222146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 37202735 - 37202620
Alignment:
Q  107 ataacaaaccttgcctctcggctctccatagtagacttcaccaaaaccaccttgaccaattttgttagccaagctgaagttatcagtagcattggctagt 206  Q
    |||||| ||||  |||||| ||||| ||||| ||||||| ||||||||||||| ||||||||| ||||||| |||||| ||||  || ||| | | ||||    
T  37202735 ataacagacctgtcctctcagctctgcatagaagacttctccaaaaccaccttcaccaattttattagccatgctgaaattatttgtggcaatcgatagt 37202636  T
Q  207 tcttcgtacgaaaatt 222  Q
    |||| ||| |||||||    
T  37202635 tctttgtatgaaaatt 37202620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 479
Target Start/End: Complemental strand, 37227754 - 37227686
Alignment:
Q  411 caaaaataaatagtcatcaacatggccgattctatgatatgtttgaaggccaaacctgcttttctgcaa 479  Q
    |||||||||||||||||||| || ||| ||||| || || |||||||||  ||||||||||||||||||    
T  37227754 caaaaataaatagtcatcaatatagccaattctctggtaagtttgaaggtgaaacctgcttttctgcaa 37227686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 37216501 - 37216435
Alignment:
Q  274 cattcttatttcgaaagtatatagcatatatactaattgctaataacagaaccatgcatgttcctcc 340  Q
    ||||||| |||||||||||| || ||||||||| || |  |||||||||||||||||||| ||||||    
T  37216501 cattcttctttcgaaagtatctaacatatatacaaagtaataataacagaaccatgcatgatcctcc 37216435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 37227939 - 37227881
Alignment:
Q  274 cattcttatttcgaaagtatatagcatatatactaattgctaataacagaaccatgcat 332  Q
    ||||||| || ||||||||| || ||||||||| ||||||||||| |||||||||||||    
T  37227939 cattcttcttgcgaaagtatctaacatatatacaaattgctaatagcagaaccatgcat 37227881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 37231451 - 37231373
Alignment:
Q  254 tggcaatttagtttcctttgcattcttatttcgaaagtatatagcatatatactaattgctaataacagaaccatgcat 332  Q
    |||||||||||  || | | ||||||| || ||||||||| || ||||||||| ||||||||||| |||||||||||||    
T  37231451 tggcaatttagactcttctccattcttcttgcgaaagtatctaacatatatacaaattgctaatagcagaaccatgcat 37231373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 506
Target Start/End: Complemental strand, 37216313 - 37216221
Alignment:
Q  411 caaaaataaatagtcatcaacatggccgattctatgatatgtttgaaggccaaacctgcttttctgcaaaagagaaaaggaaatataaataatgat 506  Q
    |||||||||||||||||||| || ||| | ||| ||||| |||||||||  ||||   ||||||||||| || |||||||||||| |||| |||||    
T  37216313 caaaaataaatagtcatcaatatagccaactctctgataagtttgaaggtgaaac---cttttctgcaagagggaaaaggaaatagaaatcatgat 37216221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 728 - 776
Target Start/End: Complemental strand, 35135782 - 35135734
Alignment:
Q  728 atatttctataataaaagaaaaattaaaggcaaactattttcatataag 776  Q
    |||||||||||| |||||| ||| ||||| |||||||||||||||||||    
T  35135782 atatttctataacaaaagataaaataaagtcaaactattttcatataag 35135734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 729 - 777
Target Start/End: Complemental strand, 37063193 - 37063145
Alignment:
Q  729 tatttctataataaaagaaaaattaaaggcaaactattttcatataagt 777  Q
    ||||||||||| |||||| ||| ||||| ||||||||||||||||||||    
T  37063193 tatttctataacaaaagataaaataaagtcaaactattttcatataagt 37063145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 37222525 - 37222397
Alignment:
Q  274 cattcttatttcgaaagtatatagcatatatactaattgctaataacagaaccatgcatgttcctccga---------cagcagtagctaaactcctagc 364  Q
    |||||||  ||||||||||| || ||||||||| || |  |||||||||||||||||||  |||||| |         |||| ||| ||||||| || ||    
T  37222525 cattcttcattcgaaagtatctaacatatatacaaagtaataataacagaaccatgcataatcctccaatagatattccagctgtacctaaacttcttgc 37222426  T
Q  365 taaatgacctgcttatatagatagaaatt 393  Q
    ||||||||||||||||||| |||||||||    
T  37222425 taaatgacctgcttatatatatagaaatt 37222397  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 411 - 479
Target Start/End: Complemental strand, 37231246 - 37231178
Alignment:
Q  411 caaaaataaatagtcatcaacatggccgattctatgatatgtttgaaggccaaacctgcttttctgcaa 479  Q
    |||||||||||| ||||||| || ||| ||||| || || |||||||||  ||||||||||||||||||    
T  37231246 caaaaataaatattcatcaatatagccaattctctggtaagtttgaaggtgaaacctgcttttctgcaa 37231178  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 928 - 966
Target Start/End: Complemental strand, 37221714 - 37221676
Alignment:
Q  928 acctttccctggaataaaaactagcccacttccttggct 966  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  37221714 acctttccctggaataaaaacaagaccacttccttggct 37221676  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 928 - 966
Target Start/End: Complemental strand, 37440762 - 37440724
Alignment:
Q  928 acctttccctggaataaaaactagcccacttccttggct 966  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  37440762 acctttccctggaataaaaaccagaccacttccttggct 37440724  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 729 - 776
Target Start/End: Complemental strand, 29007835 - 29007788
Alignment:
Q  729 tatttctataataaaagaaaaattaaaggcaaactattttcatataag 776  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||    
T  29007835 tatttctataacaaaagaaaaattaaagtcaaactattttcatataag 29007788  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 730 - 782
Target Start/End: Original strand, 22471283 - 22471335
Alignment:
Q  730 atttctataataaaagaaaaattaaaggcaaactattttcatataagtcataa 782  Q
    |||||| |||| ||||| |||||||||||||||| ||||||||||||| ||||    
T  22471283 atttctttaattaaagataaattaaaggcaaactgttttcatataagttataa 22471335  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 729 - 777
Target Start/End: Original strand, 27406002 - 27406050
Alignment:
Q  729 tatttctataataaaagaaaaattaaaggcaaactattttcatataagt 777  Q
    |||||||||| ||||||| ||| |||||||||||||||| |||||||||    
T  27406002 tatttctatagtaaaagataaaataaaggcaaactatttgcatataagt 27406050  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 729 - 776
Target Start/End: Complemental strand, 17952820 - 17952773
Alignment:
Q  729 tatttctataataaaagaaaaattaaaggcaaactattttcatataag 776  Q
    ||||||||||| |||||| ||| ||||| |||||||||||||||||||    
T  17952820 tatttctataacaaaagataaaataaagtcaaactattttcatataag 17952773  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 729 - 783
Target Start/End: Complemental strand, 1193 - 1139
Alignment:
Q  729 tatttctataataaaagaaaaattaaaggcaaactattttcatataagtcataaa 783  Q
    ||||||||||| |||||| ||| ||||| ||||||||| ||||||||| ||||||    
T  1193 tatttctataacaaaagataaaataaagtcaaactattctcatataagccataaa 1139  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 729 - 783
Target Start/End: Original strand, 2782 - 2836
Alignment:
Q  729 tatttctataataaaagaaaaattaaaggcaaactattttcatataagtcataaa 783  Q
    ||||||||||| |||||| ||| ||||| ||||||||| ||||||||| ||||||    
T  2782 tatttctataacaaaagataaaataaagtcaaactattctcatataagccataaa 2836  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 729 - 775
Target Start/End: Complemental strand, 27728140 - 27728094
Alignment:
Q  729 tatttctataataaaagaaaaattaaaggcaaactattttcatataa 775  Q
    ||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  27728140 tatttctataaaaaaagataaaataaagtcaaactattttcatataa 27728094  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 772
Target Start/End: Complemental strand, 503443 - 503402
Alignment:
Q  731 tttctataataaaagaaaaattaaaggcaaactattttcata 772  Q
    |||||||||||||||||||||||||| ||| | |||||||||    
T  503443 tttctataataaaagaaaaattaaagtcaatccattttcata 503402  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 731 - 776
Target Start/End: Complemental strand, 27595684 - 27595639
Alignment:
Q  731 tttctataataaaagaaaaattaaaggcaaactattttcatataag 776  Q
    |||||||||||||||| ||| ||||| |||| ||||||||||||||    
T  27595684 tttctataataaaagataaaataaagtcaaattattttcatataag 27595639  T

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