View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_101 (Length: 220)
Name: NF1348_low_101
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_101 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 27887237 - 27887098
Alignment:
| Q |
1 |
gcaagaaataatgtaaattcaattcaacnnnnnnnnn-tgtaaattcaatatataacagtaaaggtttggctattaaaaataaggaaggaacacacctgc |
99 |
Q |
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| T |
27887237 |
gcaagaaataatgtaaattcaattcaacaaaaaaaaaatgtaaattcaatatataacagtaaaggtttggctattaaaaataaggaaggaacacacctgc |
27887138 |
T |
|
| Q |
100 |
aattttttcaagtggtaagaggcttgtgctgtgtgcatct |
139 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
27887137 |
aattttttcaagtggtaagaggcttgtgttgtgtgcatct |
27887098 |
T |
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