View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_106 (Length: 208)
Name: NF1348_low_106
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_106 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38392804 - 38392692
Alignment:
| Q |
1 |
gtggattaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
38392804 |
gtggattaagtcatacaaaaatgagcataaattcaaattatactttgttcaacgaaattaaaagattgaatggaccaatatacaatgtttgttctgaggc |
38392705 |
T |
|
| Q |
101 |
tccaccccatatt |
113 |
Q |
| |
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||||||||||||| |
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| T |
38392704 |
tccaccccatatt |
38392692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38383946 - 38383835
Alignment:
| Q |
1 |
gtggattaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggc |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
38383946 |
gtggattaagtcatacaaaa-tgagcataaattcaaattatactttgttcaacgaaattaaaagattgaatggaccaatatacaaagtttgttttgaggc |
38383848 |
T |
|
| Q |
101 |
tccaccccatatt |
113 |
Q |
| |
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||||||||||||| |
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| T |
38383847 |
tccaccccatatt |
38383835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 38401376 - 38401275
Alignment:
| Q |
5 |
attaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggctcca |
104 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
38401376 |
attaagtcatacgaaaatgagcataaattcaaatgatactttgttctaccaaattaaaagattgaatgaaacaatatacaatgtttgtattgaggctcca |
38401277 |
T |
|
| Q |
105 |
cc |
106 |
Q |
| |
|
|| |
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| T |
38401276 |
cc |
38401275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 37838415 - 37838527
Alignment:
| Q |
1 |
gtggattaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
37838415 |
gtggattaagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaaactgtatacaaaatttgttttgaggc |
37838514 |
T |
|
| Q |
101 |
tccaccccatatt |
113 |
Q |
| |
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||||||||||||| |
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|
| T |
37838515 |
tccaccccatatt |
37838527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 37843978 - 37844090
Alignment:
| Q |
1 |
gtggattaagtcatacaaaaatgagcataaattcaaattttactttgttcaacgaaattaaaagattgaatgaaccaatatacaatgtttgttttgaggc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||| ||| ||| ||||| |
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| T |
37843978 |
gtggaataagtcatacaaaaatgagcataaattcaaatgatactttgttctacgaaattaaaagattgaatgaagcaggttacaaaatttatttagaggc |
37844077 |
T |
|
| Q |
101 |
tccaccccatatt |
113 |
Q |
| |
|
||||||||||||| |
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|
| T |
37844078 |
tccaccccatatt |
37844090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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