View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_11 (Length: 598)
Name: NF1348_low_11
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 72 - 587
Target Start/End: Original strand, 32528454 - 32528969
Alignment:
| Q |
72 |
tttttctctaatgaaagtctttcattggatgaagtttctattgggtaaaagattccctattgaaaatgcatgctctaattcacgtcatcatttcattcat |
171 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32528454 |
tttttctctaatgaaagtcttgaataggatgaagtttctattgggtaaaagattccctattgaaaatgcatgctctaattcacgtcatcatttcatttat |
32528553 |
T |
|
| Q |
172 |
gcatactcatttttccaataaataacagcttagttgaattacttgaagtaattcattccacgattctgtttggtgcacccactgtagtacgctctaacga |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528554 |
gcatactcatttttccaataaataacagcttagttgaattacttgaagtaattcattccacgattctgtttggtgcacccactgtagtacgctctaacga |
32528653 |
T |
|
| Q |
272 |
gcaagaacaatgaatagcattgttgaattaagttttcaatttacatgacttatatttaaactgcatatatactgaaattcactcatcatcaaaatcacgc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528654 |
gcaagaacaatgaatagcattgttgaattaagttttcaatttacatgacttatatttaaactgcatatatactgaaattcactcatcatcaaaatcacgc |
32528753 |
T |
|
| Q |
372 |
aagctcgacattctcctatatactcattttataaatgctgcctttatgcaacaacaaaacaacatttaaataaaacattattggattcttccatgcggat |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528754 |
aagctcgacattctcctatatactcattttataaatgctgcctttatgcaacaacaaaacaacatttaaataaaacattattggattcttccatgcggat |
32528853 |
T |
|
| Q |
472 |
catgttgtgcatgtttttggtcgagctagcttgcgattaactcgctgc----taattcattcactttgtccattgaaaatacatagtaataacgtaactt |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528854 |
catgttgtgcatgtttttggtcgagctagcttgcgattaactcgctgctaattaattcattcactttgtccattgaaaatacatagtaataacgtaac-- |
32528951 |
T |
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| Q |
568 |
aattagggtgcaagatctgt |
587 |
Q |
| |
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|||||||||||||||||| |
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| T |
32528952 |
--ttagggtgcaagatctgt |
32528969 |
T |
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