View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_18 (Length: 518)
Name: NF1348_low_18
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 28 - 439
Target Start/End: Original strand, 44559810 - 44560221
Alignment:
| Q |
28 |
agtccaagtgctaaccattactttgcaaataaataatctgagggtttagcaacaatgcctctcctcaagtatccctcggctatattttcccttcaaaaca |
127 |
Q |
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| T |
44559810 |
agtccaagtgctaaccattactttgcaaataaataatctgagggtttagcaacaatgcctctcctcaagtatccctcggctatattttcccttcaaaaca |
44559909 |
T |
|
| Q |
128 |
ctgcaccacaagataaccttaccctcgttcatctcctaacccatcttcattaagcaagcactactcattgtatgaaggcttctaccggggccaaggaaac |
227 |
Q |
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| T |
44559910 |
ctgcaccacaagataaccttaccctcgttcatctcctaacccatcttcattaagcaagcactactcattgtatgaaggcttctaccggggccaaggaaac |
44560009 |
T |
|
| Q |
228 |
tcttagccttctaacccgaaagtttggactttactttatcaatcaaattatcgtagtcactctagcgcggagctctaccaatcaaagggacttggttttc |
327 |
Q |
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| T |
44560010 |
tcttagccttctaacccgaaagtttcgactttactttatcaatcaaattaccgtagtcactctagcgcggagctctaccaatcaaagggacttggttttc |
44560109 |
T |
|
| Q |
328 |
gaaacctatttccttcaaacacaacattatcatcatctctactctcagtaaactatctttatagaagttagtcatcgtatcctttagctccgtatcatct |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44560110 |
gaaacctatttccttcaaacacaacattatcatcatctctactctcagtaaactatctttatagaagttagtcaccgtatcctttagctccgtatcatct |
44560209 |
T |
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| Q |
428 |
tcagtataatct |
439 |
Q |
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| T |
44560210 |
tcaatataatct |
44560221 |
T |
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