View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_20 (Length: 488)
Name: NF1348_low_20
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 51 - 289
Target Start/End: Original strand, 2041100 - 2041338
Alignment:
| Q |
51 |
caaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgt |
150 |
Q |
| |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2041100 |
caaactgcttctcaaagaactttctccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactggtcaagtgt |
2041199 |
T |
|
| Q |
151 |
gcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaacc |
250 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2041200 |
gcagtgaggcaagattctctcaagcatatcatgatcaacatgactaacatctccaaggtattttacattatcaatacctttctcaacacaaagatcaacc |
2041299 |
T |
|
| Q |
251 |
aaaggtgtttgatcctttcttttcatcataacaggattc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2041300 |
aaaggtgtttgatcctttcttttcatcataacaggattc |
2041338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 51 - 289
Target Start/End: Complemental strand, 1352557 - 1352319
Alignment:
| Q |
51 |
caaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgt |
150 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||| |||||||| |
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| T |
1352557 |
caaattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatccctttatttgtcttctcaatatgcatcaactgttcaagtgt |
1352458 |
T |
|
| Q |
151 |
gcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaacc |
250 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1352457 |
gcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaacc |
1352358 |
T |
|
| Q |
251 |
aaaggtgtttgatcctttcttttcatcataacaggattc |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1352357 |
aaaggtgtttgatcctttcttttcatcataacaggattc |
1352319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 51 - 285
Target Start/End: Complemental strand, 1357678 - 1357444
Alignment:
| Q |
51 |
caaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgt |
150 |
Q |
| |
|
|||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1357678 |
caaattgcttttcaaagaactttttccacaatttatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgttcaagtgt |
1357579 |
T |
|
| Q |
151 |
gcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaacc |
250 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357578 |
gcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaacc |
1357479 |
T |
|
| Q |
251 |
aaaggtgtttgatcctttcttttcatcataacagg |
285 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| |
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|
| T |
1357478 |
aaacatgtttgatcctttctcttcatcataacagg |
1357444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 1364508 - 1364328
Alignment:
| Q |
51 |
caaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgt |
150 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
1364508 |
caaattgcttctcaaagaactttttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgttcaagtgt |
1364409 |
T |
|
| Q |
151 |
gcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagcttt |
231 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1364408 |
gcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagcttt |
1364328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 322 - 478
Target Start/End: Complemental strand, 1357406 - 1357250
Alignment:
| Q |
322 |
atctagttagtgtaaagagacacgtgtcacttgatccaataattaaggataaattgctaacagaaatggatataaaaggagaaaggatgaattatgggaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357406 |
atctagttagtgtaaagagacacgtgtcacttgatccaataattaaggataaattgctaacagaaatggatataaaaggagaaaggatgaattatgggaa |
1357307 |
T |
|
| Q |
422 |
ggcatgaaaataatatggattgaagtctctatttctccctctgaatattcttctctg |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1357306 |
ggcatgaaaataatatggattgaagtctctatttctccctctgaatattcttctctg |
1357250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 51 - 289
Target Start/End: Complemental strand, 36717590 - 36717352
Alignment:
| Q |
51 |
caaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgt |
150 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||| |
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| T |
36717590 |
caaactgcttttcaaagaattttttccacaatttatcagttatagggctcaaatccatcccttcacttgccttctcaatatgcatcaactgatcaagtgt |
36717491 |
T |
|
| Q |
151 |
gcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaacc |
250 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36717490 |
gcagtgaggcaagattctctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaacc |
36717391 |
T |
|
| Q |
251 |
aaaggtgtttgatcctttcttttcatcataacaggattc |
289 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
36717390 |
aaagatgtttgatcctttctcttcatcataacaggattc |
36717352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 51 - 279
Target Start/End: Original strand, 24620403 - 24620630
Alignment:
| Q |
51 |
caaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatcccttgagtggacttctcaatatgcatcaactgatcaagtgt |
150 |
Q |
| |
|
|||||||||| |||| ||| ||||||||| || || | |||| ||||||||||||||| || | ||| ||||||||||||||| | | |||||||| |
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|
| T |
24620403 |
caaactgcttttcaataaactttttccacagtttattcgatatatggctcaaatccatcc-ttcattggccttctcaatatgcatgttccggtcaagtgt |
24620501 |
T |
|
| Q |
151 |
gcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaacc |
250 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24620502 |
gcagtgaggcaagattcactcaagcatatgatgatcaacatgactaacatctccaaggtattttacattatcaatagctttctcaacacaaagatcaacc |
24620601 |
T |
|
| Q |
251 |
aaaggtgtttgatcctttcttttcatcat |
279 |
Q |
| |
|
||| ||||||||||||||| |||||||| |
|
|
| T |
24620602 |
aaatatgtttgatcctttctcttcatcat |
24620630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 18180119 - 18180249
Alignment:
| Q |
121 |
cttctcaatatgcatcaactgatcaagtgtgcagtgaggcaagactttctcaagcatatgatgatcaacatgactaacatctccaaggtattttacatta |
220 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||| ||| ||||| |||||||||| ||| |||| |
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|
| T |
18180119 |
cttctcgatatgcgtcaactggtcaagtgtgcagtgtggcaagattcgttcaagcagatgatgatcaacaggaccaacatttccaaggtatcttaaatta |
18180218 |
T |
|
| Q |
221 |
tcaatagctttctcaacacaaagatcaacca |
251 |
Q |
| |
|
|| |||||| | | ||||||||||||||||| |
|
|
| T |
18180219 |
tctatagctgtttgaacacaaagatcaacca |
18180249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 18179966 - 18180026
Alignment:
| Q |
51 |
caaactgcttctcaaagaacattttccacaattgatctgttatagggctcaaatccatccc |
111 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
18179966 |
caaactgcttttcaaagaactttttccacaatttatctgttaccgggctcaaatccatccc |
18180026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 460
Target Start/End: Complemental strand, 15435066 - 15434983
Alignment:
| Q |
375 |
ttgctaacagaaatggatataaaaggagaaaggatgaattatgggaag-gcatgaaaataatatggattgaagtctctatttctccc |
460 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| ||||| ||| || | ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
15435066 |
ttgctaagagaaatggatataaa-ggagaaagtctgaatgatgtgaggagcatgaaaataat--ggattgaagtctctatttctccc |
15434983 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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