View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_23 (Length: 465)
Name: NF1348_low_23
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 338
Target Start/End: Original strand, 6688306 - 6688640
Alignment:
| Q |
5 |
tctccaataatatcccctaaatttctctcatttaccatcttataatcgctcaaagattttcactctcaatgtgtttcccatgttttccaagtgtttccca |
104 |
Q |
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| T |
6688306 |
tctccaagaacatcccctaaatttctctcatttaccatcttataatcgctcaaagattttcactctaaatgtgtttcccatgttttccaagtgtttccca |
6688405 |
T |
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| Q |
105 |
ctctagaatctctctcagaaaggcatcaatcctttttcagagtcccctcatatggttttccaaaattcacatttttctaacccttaaatctttcctgtag |
204 |
Q |
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| T |
6688406 |
ctctagaatctctctcagaaaggcatcaatcctttttcagagtcccctcgtatggttttccaaaattcacatttttctaacccttaaatctttcccgtag |
6688505 |
T |
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| Q |
205 |
ttcctttaacccttagcttttaaggttcatnnnnnnncccttctttgatttcatgtgattccac-aaaataacaagttttggccatttatacactccaaa |
303 |
Q |
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| T |
6688506 |
ttcctttaacccttagcttttaaggttcataaaaaaatccttctttgatttcatgtgattccacaaaaataacaagttttggccatttatacactcccaa |
6688605 |
T |
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| Q |
304 |
agttgnnnnnnnttggagcccacgactctcttgtg |
338 |
Q |
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| T |
6688606 |
agttgaaaaaaaatggagcccatgactctcttgtg |
6688640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 367
Target Start/End: Original strand, 6693978 - 6694011
Alignment:
| Q |
334 |
ttgtgcaccaagcccagccccttcatgcacctag |
367 |
Q |
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| T |
6693978 |
ttgtgcaccaagcgcagccccttcatgcacctag |
6694011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 51904857 - 51904902
Alignment:
| Q |
23 |
aaatttctctcatttaccatcttataatcgctcaaagattttcact |
68 |
Q |
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| T |
51904857 |
aaatttctctcatttaccctcttataatcacttaaaaattttcact |
51904902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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