View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_24 (Length: 460)
Name: NF1348_low_24
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 37 - 295
Target Start/End: Original strand, 42085589 - 42085859
Alignment:
| Q |
37 |
cacgcaccatttcgatgtatccttgttcaaattttgattattttttcacttcggatc------------agcgagaaagttgtaatgaagaggtttcgct |
124 |
Q |
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| T |
42085589 |
cacgcaccatttcgatgtatccttgttcaaattttgattattttttcacttcggatcataaggtcgatcagcgagaaagttgtaatgaagaggtttcgct |
42085688 |
T |
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| Q |
125 |
gaatcttcctttgccggtggtcggaatacagattttcgggttctaaggcctgcaaagaatgaaactttgggctttccttatgggcctgcctgcaagctct |
224 |
Q |
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| T |
42085689 |
gaatcttcctttgccggtggtcggaatacagattttcgggttctaaggcctgcagagaatgatactttgggctttccttataggcctgcctgcaagctct |
42085788 |
T |
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| Q |
225 |
tccactttggactaatgaatggaagttgttattcatactccattttaatctgtaatacacctaccctattt |
295 |
Q |
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| T |
42085789 |
tccactttggactaatgaatggaagttgttattcatactccattttaatctgtaatacacctaccctattt |
42085859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 42086780 - 42086830
Alignment:
| Q |
299 |
tatcttaaaatcaacaaagttgcggatactttttaccaaatttaggttgaat |
350 |
Q |
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| T |
42086780 |
tatcttaaaatcaacaaagttgcggatac-ttttaccaagtttaggttgaat |
42086830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 375 - 460
Target Start/End: Original strand, 24057822 - 24057907
Alignment:
| Q |
375 |
accaatggtttatgctactgctaaagccatgggaagtgcctcaagaggttaccgcttaaattgggtattccgtgtaaggccaaact |
460 |
Q |
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| T |
24057822 |
accaatggtttatgctactgctaaagccatgggaagtgcctcaagaggttaccgcttaaattgggtattccgtgtaaggccaaact |
24057907 |
T |
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