View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_25 (Length: 459)
Name: NF1348_low_25
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 29 - 446
Target Start/End: Original strand, 24425413 - 24425845
Alignment:
| Q |
29 |
acttttggctatgtttttgtccaaaattagatgttgaattgttgatattgatacaattatgaacttttgactttgtttttgatagaattagatgttgtcc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24425413 |
acttttggctatgtttttgtccaaaattagatgttgaattgttgatattgatacaattatgaacttttgactttgtttttgatagaattagatgttgtcc |
24425512 |
T |
|
| Q |
129 |
aaaattaggtacaggcagtatcaccagggtcatttgtgcctcaagctccgtacagaaacgcttgggcgcaataatgtca--------------attgcgc |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
24425513 |
aaaactaggtacaggcagtatcaccagggtcatttgcgcctcaagctccgtacagaaacgcttgggtgcaataatgtcagaagcccatagtcaattgcgc |
24425612 |
T |
|
| Q |
215 |
ctgaagcactagaaaataccacttgggcgatgacattgcaatagtcctagagttatttgtgttccaagcgctatgacacatgcttaggtgcagaagaaag |
314 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
24425613 |
ctgaagcactagaaaataccacttgggcgctgacattgcagtagtcctagagttatttgtgttccaagcgctatgacacatgcttaggcgc---agaaag |
24425709 |
T |
|
| Q |
315 |
gtcagtaaacccagagtcgtttgcgccctaagcgcatcaaacatgtgtctaggtgctgactaggc----agtaatcccagagttgttttcgcctgaagca |
410 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24425710 |
gtcagtagacccagagtcgtttgcgccctaagcgcatcaaacatgtgtctaggtgctgactaggcagtaagtaatcccagagttgttttcgcctgaagcg |
24425809 |
T |
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| Q |
411 |
gcgtaaaggcacgcttgagagctagacaaagtagta |
446 |
Q |
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| ||||||||||||||||||||||||||||| |||| |
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| T |
24425810 |
gtgtaaaggcacgcttgagagctagacaaagcagta |
24425845 |
T |
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