View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_3 (Length: 710)
Name: NF1348_low_3
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 199 - 700
Target Start/End: Original strand, 7148085 - 7148586
Alignment:
| Q |
199 |
aacctctgcatcaaaccaacccttcccaccttcaatcctaggatacctaaatgaatgatctcttggatcatacaaaatcaagtcaaactcaaacatcaac |
298 |
Q |
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| T |
7148085 |
aacctctgcatcaaaccaacccttcccaccttcaatcctaggatacctaaatgaatgatctcttggatcatacaaaatcaagtcaaactcaaacatcaac |
7148184 |
T |
|
| Q |
299 |
aagacttcaccattctctgaaatacaataaggccctgagtatgagaaatcttcaggatttggcaaataagggattttcaacaatttaatccaagactctc |
398 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7148185 |
aagacttcaccattctctgaaatacaataaggccccgagtatgagaaatcttcaggatttggcaaataagggattgtcaacaatttaatccaagactctc |
7148284 |
T |
|
| Q |
399 |
tcacaccataatccttcatcaaccatacaacaaaatcagtctttttgtaatcataattcatgcaaagacaaccctttagcacactcaaactaggagttga |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7148285 |
tcacaccataatccttcatcaaccatacaacaaaatcagtctttttgtaatcataattcatgcaaagacaaccctttagcacactcaaactaggagttga |
7148384 |
T |
|
| Q |
499 |
acactcttccttttcataatcaggtggaagcacttccctataagtttccttctccaaatccaaagaaacaatagtccaaaatgaacttgaaccaattgag |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7148385 |
acactcttccttttcataatcaggtggaagcacttccctataagtttccttctccaaatccaaagaaacaatagtccaaaaagaacttgaaccaattgag |
7148484 |
T |
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| Q |
599 |
taattagaagcccaattgagtgtaccactaacaaatttcccagatgaattttggtaaggtgaaacaccatgaggaaaatcatgaatcttcctccaagtat |
698 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7148485 |
taattagaagcccaattgagtgtaccactaacaaatttcccagatgaattttggtaaggtgaaacaccatgaggaaaatcatgaatcttcctccaagtat |
7148584 |
T |
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| Q |
699 |
ta |
700 |
Q |
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| T |
7148585 |
ta |
7148586 |
T |
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