View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348_low_39 (Length: 411)

Name: NF1348_low_39
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348_low_39
NF1348_low_39
[»] chr3 (5 HSPs)
chr3 (1-329)||(26469068-26469395)
chr3 (337-405)||(20823098-20823166)
chr3 (337-369)||(17605464-17605496)
chr3 (337-369)||(36708349-36708381)
chr3 (337-368)||(45683639-45683670)
[»] chr2 (5 HSPs)
chr2 (337-405)||(37642962-37643030)
chr2 (337-369)||(3952770-3952802)
chr2 (337-369)||(16212649-16212681)
chr2 (337-368)||(28401195-28401226)
chr2 (337-369)||(16084208-16084240)
[»] chr1 (2 HSPs)
chr1 (337-374)||(34854279-34854316)
chr1 (337-369)||(43510434-43510466)
[»] scaffold0014 (1 HSPs)
scaffold0014 (337-369)||(72347-72379)
[»] chr7 (6 HSPs)
chr7 (337-369)||(15765539-15765571)
chr7 (337-369)||(25185825-25185857)
chr7 (337-368)||(8770898-8770929)
chr7 (337-368)||(48620236-48620267)
chr7 (337-369)||(18670634-18670666)
chr7 (337-369)||(18766874-18766906)
[»] chr6 (5 HSPs)
chr6 (337-369)||(1550804-1550836)
chr6 (337-369)||(6004432-6004464)
chr6 (337-369)||(6007962-6007994)
chr6 (337-369)||(9564834-9564866)
chr6 (337-369)||(21548312-21548344)
[»] chr5 (5 HSPs)
chr5 (337-369)||(3169168-3169200)
chr5 (337-369)||(29740769-29740801)
chr5 (337-369)||(34311662-34311694)
chr5 (337-369)||(35055469-35055501)
chr5 (337-369)||(35072211-35072243)
[»] chr4 (3 HSPs)
chr4 (337-369)||(55223115-55223147)
chr4 (337-368)||(46639635-46639666)
chr4 (337-369)||(50451544-50451576)
[»] chr8 (3 HSPs)
chr8 (337-368)||(40471324-40471355)
chr8 (337-369)||(15148225-15148257)
chr8 (337-369)||(44083654-44083686)
[»] scaffold0006 (1 HSPs)
scaffold0006 (340-369)||(41601-41630)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 26469395 - 26469068
Alignment:
Q  1 tgatataaattaaattctaatattattcgaattaaaaacggcactaaatgtcaaacgcacatgaattagagaggatatgcatgaacaagtcttaatcaag 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26469395 tgatataaattaaattataatattattcgaattaaaaacggcactaaatgtcaaacgcacatgaattagagaagatatgcatgaacaagtcttaatcaag 26469296  T
Q  101 tagtnnnnnnncacaaaatctgaacaaataagccaggtcagatacctaattattgatgggttaggacagtagatctagctacacctttgtataatttata 200  Q
    ||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26469295 tagtaagaaa-cacaaaaactgaacaaataagccaggtcagatacctaattattgatgggttaggacagtagatctagctacatctttgtataatttata 26469197  T
Q  201 aataaattataataactcaaaacatcacgaaccatctatggtggctctttatgcatagagattccatcaattattggatatatatgtgtgtatgatgcat 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26469196 aataaattataataactcaaaacatcacgaaccatctttggtggctctttatgcatagagattccatcaattattggatatatgtgtgtgtatgatgcat 26469097  T
Q  301 gtacaaaataataatgatggtcataataa 329  Q
    ||||||||||||||| |||||||||||||    
T  26469096 gtacaaaataataataatggtcataataa 26469068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 405
Target Start/End: Complemental strand, 20823166 - 20823098
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaatgagccgattccaaatacaagatgtgcctatgatac 405  Q
    ||||||||||||||||||||||||| |||||||  ||| ||| ||||  |||||||||||||| |||||    
T  20823166 aagaaatcaaaatgaaattatataatacaccaaccagcagatcccaagcacaagatgtgcctaggatac 20823098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 17605496 - 17605464
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  17605496 aagaaatcaaaatgaaattatataacacaccaa 17605464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 36708349 - 36708381
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  36708349 aagaaatcaaaatgaaattatataacacaccaa 36708381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 368
Target Start/End: Original strand, 45683639 - 45683670
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacacca 368  Q
    ||||||||||||||||||||||||||||||||    
T  45683639 aagaaatcaaaatgaaattatataacacacca 45683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 37642962 - 37643030
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaatgagccgattccaaatacaagatgtgcctatgatac 405  Q
    |||||||||||||||||||||||||||||||||  ||| | ||||||| ||||| |||| ||| |||||    
T  37642962 aagaaatcaaaatgaaattatataacacaccaaacagcggtttccaaacacaaggtgtgtctaggatac 37643030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 3952770 - 3952802
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  3952770 aagaaatcaaaatgaaattatataacacaccaa 3952802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 16212649 - 16212681
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  16212649 aagaaatcaaaatgaaattatataacacaccaa 16212681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 368
Target Start/End: Complemental strand, 28401226 - 28401195
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacacca 368  Q
    ||||||||||||||||||||||||||||||||    
T  28401226 aagaaatcaaaatgaaattatataacacacca 28401195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 16084240 - 16084208
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    ||||||||||||||||||||||||| |||||||    
T  16084240 aagaaatcaaaatgaaattatataatacaccaa 16084208  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 34854316 - 34854279
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaatgagc 374  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  34854316 aagaaatcaaaatgaaattatataacacaccaaagagc 34854279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 43510466 - 43510434
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  43510466 aagaaatcaaaatgaaattatataacacaccaa 43510434  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 72379 - 72347
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  72379 aagaaatcaaaatgaaattatataacacaccaa 72347  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 15765571 - 15765539
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  15765571 aagaaatcaaaatgaaattatataacacaccaa 15765539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 25185857 - 25185825
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  25185857 aagaaatcaaaatgaaattatataacacaccaa 25185825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 368
Target Start/End: Original strand, 8770898 - 8770929
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacacca 368  Q
    ||||||||||||||||||||||||||||||||    
T  8770898 aagaaatcaaaatgaaattatataacacacca 8770929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 368
Target Start/End: Complemental strand, 48620267 - 48620236
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacacca 368  Q
    ||||||||||||||||||||||||||||||||    
T  48620267 aagaaatcaaaatgaaattatataacacacca 48620236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 18670634 - 18670666
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||| ||||||||    
T  18670634 aagaaatcaaaatgaaattatatatcacaccaa 18670666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 18766874 - 18766906
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    ||||||||||||||||||||||||||| |||||    
T  18766874 aagaaatcaaaatgaaattatataacataccaa 18766906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 1550804 - 1550836
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  1550804 aagaaatcaaaatgaaattatataacacaccaa 1550836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 6004432 - 6004464
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||| ||||||||||||||||||    
T  6004432 aagaaatcaaaatggaattatataacacaccaa 6004464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 6007962 - 6007994
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||| ||||||||||||||||||    
T  6007962 aagaaatcaaaatggaattatataacacaccaa 6007994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 9564834 - 9564866
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||| ||||||||    
T  9564834 aagaaatcaaaatgaaattatatatcacaccaa 9564866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 21548312 - 21548344
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||| ||||||||||||    
T  21548312 aagaaatcaaaatgaaattaaataacacaccaa 21548344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 3169200 - 3169168
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  3169200 aagaaatcaaaatgaaattatataacacaccaa 3169168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 29740801 - 29740769
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  29740801 aagaaatcaaaatgaaattatataacacaccaa 29740769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 34311662 - 34311694
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    ||||||| |||||||||||||||||||||||||    
T  34311662 aagaaattaaaatgaaattatataacacaccaa 34311694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 35055469 - 35055501
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||| ||||||||    
T  35055469 aagaaatcaaaatgaaattatataccacaccaa 35055501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 35072211 - 35072243
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||| ||||||||    
T  35072211 aagaaatcaaaatgaaattatataccacaccaa 35072243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 55223115 - 55223147
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||||||||||||    
T  55223115 aagaaatcaaaatgaaattatataacacaccaa 55223147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 368
Target Start/End: Complemental strand, 46639666 - 46639635
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacacca 368  Q
    ||||||||||||||||||||||||||||||||    
T  46639666 aagaaatcaaaatgaaattatataacacacca 46639635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 50451544 - 50451576
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    |||||||||||||||||||||||| ||||||||    
T  50451544 aagaaatcaaaatgaaattatatatcacaccaa 50451576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 368
Target Start/End: Complemental strand, 40471355 - 40471324
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacacca 368  Q
    ||||||||||||||||||||||||||||||||    
T  40471355 aagaaatcaaaatgaaattatataacacacca 40471324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 15148257 - 15148225
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    ||||||| |||||||||||||||||||||||||    
T  15148257 aagaaattaaaatgaaattatataacacaccaa 15148225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 44083686 - 44083654
Alignment:
Q  337 aagaaatcaaaatgaaattatataacacaccaa 369  Q
    ||||||||||||| |||||||||||||||||||    
T  44083686 aagaaatcaaaataaaattatataacacaccaa 44083654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 41601 - 41630
Alignment:
Q  340 aaatcaaaatgaaattatataacacaccaa 369  Q
    ||||||||||||||||||||||||||||||    
T  41601 aaatcaaaatgaaattatataacacaccaa 41630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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