View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348_low_4 (Length: 698)

Name: NF1348_low_4
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348_low_4
NF1348_low_4
[»] chr2 (6 HSPs)
chr2 (24-624)||(28741596-28742196)
chr2 (20-270)||(28733400-28733650)
chr2 (35-346)||(28717744-28718051)
chr2 (398-618)||(28734837-28735057)
chr2 (367-618)||(28699309-28699557)
chr2 (411-534)||(28782803-28782926)
[»] chr8 (9 HSPs)
chr8 (434-544)||(2029856-2029966)
chr8 (479-544)||(2048095-2048160)
chr8 (481-544)||(10769503-10769566)
chr8 (434-544)||(1948067-1948177)
chr8 (482-544)||(2034774-2034836)
chr8 (434-544)||(2051989-2052099)
chr8 (454-544)||(2055846-2055936)
chr8 (479-544)||(2038852-2038917)
chr8 (568-625)||(10769422-10769479)
[»] chr4 (1 HSPs)
chr4 (479-541)||(48904892-48904954)


Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 24 - 624
Target Start/End: Original strand, 28741596 - 28742196
Alignment:
Q  24 ggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgatatcca 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28741596 ggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgtgattcatccatgattgatatcca 28741695  T
Q  124 aatcttggacgatatccctgtcaagttttttatctagaaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatct 223  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741696 aatcttggaagatatccctgtcaagttttttaactagaaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatct 28741795  T
Q  224 tcacatgacaaagattctagtttcacctaacatgatgatgtttcaaaaccaaaaccaaacccaatgtagcaatatattagtttcaacacataagcatagt 323  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||     
T  28741796 tcacatgacaaagattctagtttaacctaacatgatgatgtttcaaaacaaaaaccaaacccaatgtagcaatatattagtgtcaacacataagcatagc 28741895  T
Q  324 acaaatttcaggtccaaaattattatgacattcatttatcatgctaaataaaccagcttaatacacagcatcccccaactcaaagcttgaaatgttcaag 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741896 acaaatttcaggtccaaaattattatgacattcatttatcatgctaaataaaccagcttaatacacagcatcccccaactcaaagcttgaaatgttcaag 28741995  T
Q  424 agctgagatgccatctagtccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttct 523  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28741996 agctgagatgccatcaagcccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttct 28742095  T
Q  524 tttataggtccatagagcttttcttgtgcttctggacctgccctgaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactctctgct 623  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28742096 tttataggtccatagagcttttcttgtgctctaggacctgccctgaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactctgtgct 28742195  T
Q  624 c 624  Q
    |    
T  28742196 c 28742196  T

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Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 28733400 - 28733650
Alignment:
Q  20 ctagggatactaatctttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgata 119  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  28733400 ctagggatactaatctttgaattttattcattgactgaaacatcgttgatattagattatccacaattacgtgtcaattgggattcatccatgattgata 28733499  T
Q  120 tccaaatcttggacgatatccctgtcaagttttttatctagaaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgt 219  Q
    | ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||    
T  28733500 tacaaatcttggaagatatccctgtcaagttatttatctagaaatgcactgataatttagacaaaaaatatttgtagtaaagcatacatctaccttgtgt 28733599  T
Q  220 atcttcacatgacaaagattctagtttcacctaacatgatgatgtttcaaa 270  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28733600 accttcacatgacaaatattctagtttcacctaacatgatgatgtttcaaa 28733650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 35 - 346
Target Start/End: Original strand, 28717744 - 28718051
Alignment:
Q  35 tttgaatttcattcattgaatgaaacatcgttgatattagattctccacaattatgtgtcaattgggattcatccatgattgatatccaaatcttggacg 134  Q
    ||||||||| ||||| ||| ||||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||||||| |||| || |||||||| |    
T  28717744 tttgaatttgattcactgactgaaacatcattggtattagattctccacaattatgcgttaattgagattcatccatgattaatatacatatcttggaag 28717843  T
Q  135 atatccctgtcaagttttttatctag-aaatgcactggtaatttagacagaaaatatttgtagtaaatcaaacatctaccttgtgtatcttcacatgaca 233  Q
    ||||||||||||||  ||| |||||| |||||||| | |||||||||  |||| | ||||||||||| || |||||||||||||||| |||||||||| |    
T  28717844 atatccctgtcaagaatttcatctagaaaatgcaccgataatttagagggaaattctttgtagtaaagcatacatctaccttgtgtaccttcacatgaaa 28717943  T
Q  234 aagattctagtttcacctaacatgatgatgtttcaaaaccaaaaccaaacccaatgtagcaatatattagtttcaacacataagcatagtacaaatttca 333  Q
    || |||||||||||||  |||   ||||||||| |||| |||||||||     |  |||||||||  ||||| |||||||||||||||| ||||||||||    
T  28717944 aatattctagtttcactaaac---atgatgttttaaaatcaaaaccaa--tgtacttagcaatattatagttgcaacacataagcatagcacaaatttca 28718038  T
Q  334 ggtccaaaattat 346  Q
     ||||||||||||    
T  28718039 agtccaaaattat 28718051  T

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Target: chr2; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 398 - 618
Target Start/End: Original strand, 28734837 - 28735057
Alignment:
Q  398 ccaactcaaagcttgaaatgttcaagagctgagatgccatctagtccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttg 497  Q
    |||||||||||||||||||||| |||| | ||  ||||||| || |||||||||    ||||||||||| |||| | ||| ||||||||||||||||| |    
T  28734837 ccaactcaaagcttgaaatgttgaagaacagaagtgccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctgg 28734936  T
Q  498 gagggttgtcttctgataaaatttcttttataggtccatagagcttttcttgtgcttctggacctgccctgaaaaaagatgcaacagatactcttggacc 597  Q
    ||||||||||||||||||| | |||| ||||||||||||| |||||||| ||||||    | |||||| |||||||  |||||||||||| |||||||||    
T  28734937 gagggttgtcttctgataataattctgttataggtccataaagcttttcatgtgctctaagtcctgccttgaaaaagcatgcaacagatattcttggacc 28735036  T
Q  598 aatagtatttgctagtactct 618  Q
    |||   |||||| ||||||||    
T  28735037 aatgtcatttgccagtactct 28735057  T

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Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 367 - 618
Target Start/End: Original strand, 28699309 - 28699557
Alignment:
Q  367 ctaaataaaccagcttaatacacagcatcccccaactcaaagcttgaaatgttcaagagctgagatgccatctagtccttttgcattgtagtaggctaca 466  Q
    ||||||||||||||| ||| ||||  ||||   ||||||||||||||| | || |||| | ||  ||||||| || ||||||||||    |||||||| |    
T  28699309 ctaaataaaccagctcaatccacattatcc---aactcaaagcttgaagtcttgaagaacagaagtgccatcaagcccttttgcatacacgtaggctata 28699405  T
Q  467 aaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagcttttcttgtgcttctggacctgccc 566  Q
    ||||| | || |||||||||| | ||||| |||||||||| ||||||||| | |||| ||||||||||||| |||||||  ||||||    ||||||||     
T  28699406 aaatcagcaacagtggtttctttgtatctgggagggttgttttctgataataattctgttataggtccataaagctttttatgtgctctaagacctgcct 28699505  T
Q  567 tgaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactct 618  Q
    |||||||  |||||||||||| ||||||||||||   |||||| ||||||||    
T  28699506 tgaaaaagcatgcaacagatattcttggaccaatgccatttgccagtactct 28699557  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 411 - 534
Target Start/End: Original strand, 28782803 - 28782926
Alignment:
Q  411 tgaaatgttcaagagctgagatgccatctagtccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttc 510  Q
    ||||||||| |||||| ||||| ||||| |  ||||||| |||||||||||||||| | |||| || |||  ||||| | ||| | ||||| ||||||||    
T  28782803 tgaaatgttgaagagcagagatcccatcaatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttc 28782902  T
Q  511 tgataaaatttcttttataggtcc 534  Q
    |||||||| |||||||||||||||    
T  28782903 tgataaaaattcttttataggtcc 28782926  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 434 - 544
Target Start/End: Complemental strand, 2029966 - 2029856
Alignment:
Q  434 ccatctagtccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtc 533  Q
    ||||||||||||||||||||  |||||||| ||||||| | ||  ||||||||||| ||| | ||||| |||| ||||||||| | ||| || |||||||    
T  2029966 ccatctagtccttttgcattaaagtaggctgcaaaatcagcaactgtggtttctctgtatttgggaggattgttttctgataatagttccttcataggtc 2029867  T
Q  534 catagagcttt 544  Q
    |||||||||||    
T  2029866 catagagcttt 2029856  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 544
Target Start/End: Complemental strand, 2048160 - 2048095
Alignment:
Q  479 gtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagcttt 544  Q
    ||||||||||| ||| | ||||| |||||||||||||| | |||||| ||||||||||||||||||    
T  2048160 gtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagcttt 2048095  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 481 - 544
Target Start/End: Complemental strand, 10769566 - 10769503
Alignment:
Q  481 ggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagcttt 544  Q
    ||||||||| ||| | ||||| |||||||||||||| | ||| |||||||||||||||||||||    
T  10769566 ggtttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagcttt 10769503  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 544
Target Start/End: Original strand, 1948067 - 1948177
Alignment:
Q  434 ccatctagtccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtc 533  Q
    ||||||||||||||||| ||  |||||||| || |||| | ||  ||||||||||||||| | | ||| || | ||||||||| | ||| || |||||||    
T  1948067 ccatctagtccttttgctttaaagtaggctgcataatcagcaactgtggtttctctatatttggaaggattcttttctgataatagttccttcataggtc 1948166  T
Q  534 catagagcttt 544  Q
    |||||||||||    
T  1948167 catagagcttt 1948177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 482 - 544
Target Start/End: Complemental strand, 2034836 - 2034774
Alignment:
Q  482 gtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagcttt 544  Q
    |||||||| ||| | ||||| |||||||||||||| | ||| |||||||||||||||||||||    
T  2034836 gtttctctgtatttaggaggattgtcttctgataatagttcctttataggtccatagagcttt 2034774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 544
Target Start/End: Complemental strand, 2052099 - 2051989
Alignment:
Q  434 ccatctagtccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtc 533  Q
    |||||||||||||||||     ||||||||||| |||| | || ||  |||||||| ||| | ||||| |||||||||||||  | ||| || |||||||    
T  2052099 ccatctagtccttttgctcgaaagtaggctacataatcagcaacagaagtttctctgtatttgggaggattgtcttctgatagcagttccttcataggtc 2052000  T
Q  534 catagagcttt 544  Q
    |||||||||||    
T  2051999 catagagcttt 2051989  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 544
Target Start/End: Complemental strand, 2055936 - 2055846
Alignment:
Q  454 gtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagcttt 544  Q
    ||||||||||||| |||| | || ||| |||||| | ||| | ||||| |||||||||||||| | ||| || || |||||||||||||||    
T  2055936 gtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataacagttccttcattggtccatagagcttt 2055846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 544
Target Start/End: Complemental strand, 2038917 - 2038852
Alignment:
Q  479 gtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagcttt 544  Q
    ||||||||||| ||| | ||||| |||||||||||||| |  || ||||| |||||||||||||||    
T  2038917 gtggtttctctgtatttaggaggattgtcttctgataatagatcctttattggtccatagagcttt 2038852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 625
Target Start/End: Complemental strand, 10769479 - 10769422
Alignment:
Q  568 gaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactctctgctcc 625  Q
    ||||||| |||||||||||| ||||||||||| | ||||||| || ||||| ||||||    
T  10769479 gaaaaaacatgcaacagatattcttggaccaacattatttgcaagaactctgtgctcc 10769422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 541
Target Start/End: Original strand, 48904892 - 48904954
Alignment:
Q  479 gtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagc 541  Q
    ||||||||||| ||| | ||||| |||||||| ||||| | ||| ||||||||||||||||||    
T  48904892 gtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagc 48904954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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