View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_40 (Length: 409)
Name: NF1348_low_40
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_40 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 47 - 404
Target Start/End: Original strand, 13686026 - 13686397
Alignment:
| Q |
47 |
aatgtcccaattatgacctagtaataggtgacaaaacatattttaaatagatagactctagtannnnnnnn--------------aagaagttacattaa |
132 |
Q |
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| T |
13686026 |
aatgtcccaattatgacctaataataggtgacacaacatatttgaaatagatagactctagtaccatgatagaatatttttttttaagaagttaggttaa |
13686125 |
T |
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| Q |
133 |
cccacctaaattgacatg--aatgattgaacctaagatcttgaggatgagtacattcccagatccaaaatcaataccaccaggccaatcacagcaaagta |
230 |
Q |
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| T |
13686126 |
cccacctaaattgacatataaataattgaacctaaaattttgatgatgagtacattctcagatccaaaaccaataccaccaggcccgtcacagtaaagta |
13686225 |
T |
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| Q |
231 |
ctatctagcttgaagttcaattgcttattgtgtgtgtgagt--atataaattcagttgtagccaaagaaaatcctgaggaagatagagagagtaagatgg |
328 |
Q |
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| T |
13686226 |
ctatctag----aagttcaattgcttattgtgtgtgtgagtgtatataaattcagttgtagccaaagaaaatccagaggaagatagagagagtaagatgg |
13686321 |
T |
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| Q |
329 |
caagtgaaaagaaaaaccatgcacctcactgtctcatcttaccttatccagcacaaggccacatgaaccctatgat |
404 |
Q |
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| T |
13686322 |
aaagtgaaaagaaaaaccatgcacctcactgtctcatcttaccttatccagcacaaggccacatgaaccctatgat |
13686397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 13692793 - 13692858
Alignment:
| Q |
339 |
gaaaaaccatgcacctcactgtctcatcttaccttatccagcacaaggccacatgaaccctatgat |
404 |
Q |
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| T |
13692793 |
gaaaaaccatgtagctcactgtctgatcttaccttatccagcacaaggacatatgaatcctatgat |
13692858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 51908854 - 51908810
Alignment:
| Q |
6 |
aactaagacatgttccaaactatacaactttagactaaggcaatg |
50 |
Q |
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| T |
51908854 |
aactaagacatgttccaaactatacaactttagactaaggcaatg |
51908810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 2475 - 2527
Alignment:
| Q |
158 |
gaacctaagatcttgaggatgagtacattcccagatccaaaatcaataccacc |
210 |
Q |
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| T |
2475 |
gaacctgagaccttgaggaggagcacactcccagatccaaaaccaataccacc |
2527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 146
Target Start/End: Complemental strand, 4412477 - 4412449
Alignment:
| Q |
118 |
aagaagttacattaacccacctaaattga |
146 |
Q |
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| T |
4412477 |
aagaagttacattaacccacctaaattga |
4412449 |
T |
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