View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1348_low_42 (Length: 392)
Name: NF1348_low_42
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 34852765 - 34852910
Alignment:
| Q |
236 |
ggaacaaagaataagacggttaccgtacggataatattctcagtttcaagactttgtttgtcttcaacaaacattaccacgcgaaaaacagcgttaggcc |
335 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
34852765 |
ggaacaaagaataagacggttacggtacggataatattctcagtttcaagactttgtttgtcttcaaaaaacattaccacgcgaaaaacagcgtcaggcc |
34852864 |
T |
|
| Q |
336 |
gataatgcacgtgctgtaccacgtgacagagttgtatcttcttcat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34852865 |
gataatgcacgtgctgtaccacgtgacagaggtgtatcttcttcat |
34852910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 34852165 - 34852231
Alignment:
| Q |
30 |
aggatatcaaatgcaaaggatatnnnnnnn-ttgtgttatttgaacaaccatatgacaacttttgag |
95 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34852165 |
aggatatcaaatgcaaaggatataaaaaaaattgtgttatttgaacaaccatatgacaacttttgag |
34852231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University