View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348_low_44 (Length: 391)

Name: NF1348_low_44
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348_low_44
NF1348_low_44
[»] chr6 (4 HSPs)
chr6 (96-259)||(2983974-2984135)
chr6 (189-259)||(33444398-33444466)
chr6 (189-260)||(33442100-33442169)
chr6 (96-147)||(2980098-2980149)
[»] chr4 (1 HSPs)
chr4 (96-131)||(38885789-38885824)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 2983974 - 2984135
Alignment:
Q  96 taggctcataagcaaaatcatgcaactcaaacccataatctttaacctcatatagtcccttaccattttccatctcaagcattctagcaaattgtgttaa 195  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2983974 taggctcataagcaaaatcatgcaactcaaacccataatatttaacctcatatagtcccttacctttttccatctcaagcattctagcaaattgtgttaa 2984073  T
Q  196 aacacagtacaaaagtgatatagaagcttcattattgaagaatcaacaagaggaacatgatgca 259  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  2984074 aacacagtacaaaagtg--atagaagcttcattattgaagaatcaacaagaggaacatgatgca 2984135  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 33444398 - 33444466
Alignment:
Q  189 gtgttaaaacacagtacaaaagtgatatagaagcttcattattgaagaatcaacaagaggaacatgatgca 259  Q
    |||||||| |||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  33444398 gtgttaaagcacaatacaaaagtgatg--gaagcttcattattgaagaatcaacaagaggaacatgatgca 33444466  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 33442100 - 33442169
Alignment:
Q  189 gtgttaaaacacagtacaaaagtgatatagaagcttcattattgaagaatcaacaagaggaacatgatgcat 260  Q
    |||||||| |||| ||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||    
T  33442100 gtgttaaagcacaatacaaaagtgatg--gaagcttcattattgaagaatcaacaagatgaacatgatgcat 33442169  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 2980098 - 2980149
Alignment:
Q  96 taggctcataagcaaaatcatgcaactcaaacccataatctttaacctcata 147  Q
    |||| |||||||||||| |||||||||||||||||| || | ||||||||||    
T  2980098 taggttcataagcaaaaccatgcaactcaaacccatcatatataacctcata 2980149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 38885789 - 38885824
Alignment:
Q  96 taggctcataagcaaaatcatgcaactcaaacccat 131  Q
    ||||||||||||||||| ||||||||||||||||||    
T  38885789 taggctcataagcaaaaccatgcaactcaaacccat 38885824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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