View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348_low_51 (Length: 369)

Name: NF1348_low_51
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348_low_51
NF1348_low_51
[»] chr7 (8 HSPs)
chr7 (4-132)||(25306793-25306922)
chr7 (126-224)||(21276219-21276316)
chr7 (128-247)||(7144559-7144677)
chr7 (128-184)||(956984-957040)
chr7 (166-220)||(5740811-5740864)
chr7 (128-264)||(21020180-21020312)
chr7 (128-225)||(24140941-24141037)
chr7 (146-210)||(12341696-12341759)
[»] chr5 (8 HSPs)
chr5 (128-294)||(22186337-22186502)
chr5 (128-264)||(18807438-18807572)
chr5 (128-236)||(25770579-25770685)
chr5 (129-272)||(36740017-36740155)
chr5 (26-109)||(16017093-16017176)
chr5 (145-222)||(17246641-17246717)
chr5 (166-222)||(18672417-18672473)
chr5 (164-204)||(25460019-25460059)
[»] chr2 (18 HSPs)
chr2 (128-285)||(17496473-17496628)
chr2 (130-264)||(27483783-27483916)
chr2 (127-264)||(28574344-28574479)
chr2 (125-186)||(19915787-19915848)
chr2 (128-246)||(24109033-24109151)
chr2 (166-312)||(26712840-26712985)
chr2 (168-225)||(25563666-25563722)
chr2 (128-245)||(33013228-33013345)
chr2 (128-222)||(18038716-18038810)
chr2 (154-235)||(12061224-12061305)
chr2 (126-183)||(13896956-13897013)
chr2 (126-183)||(14037573-14037630)
chr2 (126-189)||(25905542-25905605)
chr2 (201-264)||(42297341-42297404)
chr2 (146-204)||(15376004-15376062)
chr2 (161-247)||(25905617-25905702)
chr2 (168-220)||(33241020-33241072)
chr2 (168-220)||(33248941-33248993)
[»] chr1 (8 HSPs)
chr1 (128-222)||(35896473-35896567)
chr1 (128-223)||(1615986-1616080)
chr1 (132-246)||(17776713-17776827)
chr1 (131-185)||(30498323-30498378)
chr1 (166-245)||(2818977-2819056)
chr1 (137-189)||(11105670-11105724)
chr1 (128-181)||(43281119-43281172)
chr1 (166-222)||(21617057-21617113)
[»] chr3 (12 HSPs)
chr3 (128-330)||(20648950-20649153)
chr3 (128-269)||(8108763-8108903)
chr3 (128-170)||(4523340-4523382)
chr3 (136-222)||(9796553-9796638)
chr3 (201-275)||(47597751-47597825)
chr3 (166-235)||(5797927-5797996)
chr3 (128-192)||(31375633-31375697)
chr3 (131-189)||(10924573-10924632)
chr3 (130-264)||(27686121-27686254)
chr3 (127-224)||(12129105-12129202)
chr3 (166-222)||(13932304-13932360)
chr3 (166-222)||(19705778-19705834)
[»] chr6 (5 HSPs)
chr6 (133-222)||(30701088-30701176)
chr6 (127-222)||(14315211-14315306)
chr6 (128-220)||(19691559-19691651)
chr6 (151-210)||(27989151-27989210)
chr6 (166-222)||(12394852-12394908)
[»] chr4 (11 HSPs)
chr4 (128-185)||(27941264-27941321)
chr4 (128-224)||(10220889-10220984)
chr4 (125-185)||(11010828-11010888)
chr4 (127-218)||(11442805-11442894)
chr4 (127-218)||(11550801-11550890)
chr4 (129-264)||(13976976-13977111)
chr4 (153-247)||(8863866-8863960)
chr4 (153-288)||(8860952-8861087)
chr4 (166-224)||(10328079-10328137)
chr4 (128-245)||(11700968-11701084)
chr4 (166-222)||(8677231-8677286)
[»] scaffold0008 (2 HSPs)
scaffold0008 (130-245)||(9677-9791)
scaffold0008 (130-245)||(20070-20184)
[»] chr8 (12 HSPs)
chr8 (145-224)||(6587136-6587215)
chr8 (128-235)||(12012027-12012134)
chr8 (164-221)||(17937691-17937748)
chr8 (128-209)||(24070719-24070799)
chr8 (166-245)||(17872015-17872093)
chr8 (129-247)||(5346078-5346195)
chr8 (136-222)||(12863789-12863874)
chr8 (128-222)||(13281596-13281689)
chr8 (151-221)||(27740227-27740297)
chr8 (163-224)||(13581587-13581648)
chr8 (128-181)||(19711329-19711382)
chr8 (136-270)||(29092574-29092703)
[»] scaffold1190 (1 HSPs)
scaffold1190 (128-222)||(1561-1655)
[»] scaffold0003 (1 HSPs)
scaffold0003 (128-222)||(319031-319124)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 25306922 - 25306793
Alignment:
Q  4 caccacagatgtggatcttttacaaatagttcaaatggacatgcatatcagtgttgtgtttcctaggtttatggatatagttttcaatatgattga-ttt 102  Q
    ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  25306922 caccaaagatgtggatcttttacaaagagttcaaatgaacatgcatatcagtgttgtgtttcccaggtttatggatatagttttcaatatgattgatttt 25306823  T
Q  103 tgtcatccataaagtgttagtggtgtgttg 132  Q
    ||||||||||||||||||||||||||||||    
T  25306822 tgtcatccataaagtgttagtggtgtgttg 25306793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 21276219 - 21276316
Alignment:
Q  126 tgtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtat 224  Q
    ||||||||||||||||| |||||| |||||   | |||| |||||||||| ||||||||| |||| | |||||  |||||||||||||| |||||||||    
T  21276219 tgtgttgaaccaaaatgaattttgaacaataactttgaagttttgatgattacaaagtatgaaaata-caatttgatatgttaatgtgttttcaagtat 21276316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 7144559 - 7144677
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    |||| ||||||||||  ||||  ||||||  |||||| ||||||||| |||||  ||| ||| || |||||| |||||  ||||||||||||||||| ||    
T  7144559 tgttaaaccaaaatgagttttaaacaatgactctgaagttttgatgagaacaatatatgaaa-gaacaattggatatgacaatgtgtgttcaagtatgca 7144657  T
Q  228 aaatcatataattaaattct 247  Q
     || ||||||||||||||||    
T  7144658 gaaccatataattaaattct 7144677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 957040 - 956984
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagta 184  Q
    ||||||| |||||| || |||||||||||  |||||| |||||||||||||||||||    
T  957040 tgttgaaacaaaattgaatttgtacaatgcctctgaagttttgatgataacaaagta 956984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 5740864 - 5740811
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaa 220  Q
    |||||||||| ||||||||||||| || |||||| ||||| ||||||||||||||    
T  5740864 ttttgatgattacaaagtataaaa-gaacaattggatatgctaatgtgtgttcaa 5740811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 21020312 - 21020180
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    |||||||||||||||  |||||||  || | | |||| |||||||||||||||  |||||||| |  || || |||| |||| |||||||||| ||| ||    
T  21020312 tgttgaaccaaaatgagttttgtatcatatttttgaagttttgatgataacaa--tataaaaaaa--aaatggatatattaacgtgtgttcaaatatcca 21020217  T
Q  228 aaatcatataattaaattcttattcttaaatcaagtt 264  Q
      |||||| ||||||| ||| ||| ||||||||||||    
T  21020216 ggatcatagaattaaactctaatttttaaatcaagtt 21020180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 24140941 - 24141037
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtata 225  Q
    |||||||| ||||||| |||||| ||||  |  |||  |||||||||||||||||||| ||||||  ||||| ||||| | ||||||||| |||||||    
T  24140941 tgttgaactaaaatgggttttgttcaatacaagtgatgttttgatgataacaaagtat-aaaagaaaaattgaatatgcttatgtgtgtttaagtata 24141037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 12341759 - 12341696
Alignment:
Q  146 tttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaat 210  Q
    |||||||||||  ||| |||||||||||||||||||||||  |||||  ||||| ||||||||||    
T  12341759 tttgtacaatgcctctaaaattttgatgataacaaagtat-taaagaaaaattgaatatgttaat 12341696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 294
Target Start/End: Complemental strand, 22186502 - 22186337
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    ||||||| ||||| |||||||||||||||  ||||||||||||||||||||||| || | ||| | |||||| ||||| ||||||||||| |||||| ||    
T  22186502 tgttgaatcaaaaaggattttgtacaatgcctctgaaattttgatgataacaaaata-agaaataacaattgaatatgctaatgtgtgtttaagtatgca 22186404  T
Q  228 aaatcatataattaaattcttattcttaaatcaagttctgatcctaaagtataaagactctaaacac 294  Q
      |  ||| ||||||||||| |||||||||||||||| || | || ||| || |||| |||||||||    
T  22186403 ggactataaaattaaattctaattcttaaatcaagttttggttctgaagcatcaagattctaaacac 22186337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 18807572 - 18807438
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    |||| ||||||||||| ||||| ||| ||  ||||||||||||||||||||||| ||| |||| | |||||| ||||| ||| |||||||||||| |  |    
T  18807572 tgttaaaccaaaatgggttttgaaca-tggctctgaaattttgatgataacaaaatatcaaaa-aacaattggatatgctaaggtgtgttcaagtgtgaa 18807475  T
Q  228 aaatcatataattaaattcttattcttaaatcaagtt 264  Q
      |||||| ||||||||||| | |||||| |||||||    
T  18807474 ggatcataaaattaaattctaactcttaagtcaagtt 18807438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 25770685 - 25770579
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    |||||||| ||||||| ||||| ||| ||| |||||| |||||||||||| |||| |||||| || |||||  ||||||||||||||||||||| || ||    
T  25770685 tgttgaacaaaaatgggttttgcaca-tgtctctgaagttttgatgataataaagcataaaa-gaacaattagatatgttaatgtgtgttcaagaatgca 25770588  T
Q  228 aaatcatat 236  Q
     ||||||||    
T  25770587 gaatcatat 25770579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 272
Target Start/End: Original strand, 36740017 - 36740155
Alignment:
Q  129 gttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaa 228  Q
    ||||||| ||||||  ||||||||||||  |||||||||||||  ||||||||||||  |||||||||    ||||   ||| |||| |||||||||||     
T  36740017 gttgaactaaaatgagttttgtacaatgcctctgaaattttgacaataacaaagtat-taaagagcaa----atataccaatatgtgctcaagtatacag 36740111  T
Q  229 aatcatataattaaattcttattcttaaatcaagttctgatcct 272  Q
    ||||| |||||||||||| || | | |||||||||| |||||||    
T  36740112 aatcacataattaaattcatagtatcaaatcaagttttgatcct 36740155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 16017176 - 16017093
Alignment:
Q  26 caaatagttcaaatggacatgcatatcagtgttgtgtttcctaggtttatggatatagttttcaatatgattgattttgtcatc 109  Q
    |||| |||||||| || |||||||| || |||||||| |||||||||||||| | | ||||| || ||||||||||||| ||||    
T  16017176 caaagagttcaaaaggtcatgcatagcaatgttgtgtctcctaggtttatgggtgtggtttttaagatgattgattttgccatc 16017093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 17246717 - 17246641
Alignment:
Q  145 ttttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    ||||| ||||||| |||||| |||||||||||| ||| ||| ||| || |||||| ||||||| |||| |||||||||    
T  17246717 ttttgaacaatgtctctgaagttttgatgataataaactattaaagga-caattgaatatgttgatgtttgttcaagt 17246641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 18672417 - 18672473
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||||||||| ||||||| |||||  |||||| |||||||||| | |||||||||    
T  18672417 ttttgatgataaaaaagtattaaaagttcaattgaatatgttaatatttgttcaagt 18672473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 25460059 - 25460019
Alignment:
Q  164 aattttgatgataacaaagtataaaaagagcaattgtatat 204  Q
    |||||||||||||||||||||| |||||| |||||| ||||    
T  25460059 aattttgatgataacaaagtattaaaagatcaattgaatat 25460019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 285
Target Start/End: Complemental strand, 17496628 - 17496473
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||||||||| |  | |||||| |||||| | |||||||||||||||||||||| ||    
T  17496628 tgttgaaccaaaatgaattttgtacaatgtttttgaaattttgatgataacaagg--ttaaaagaacaattgaacatgttaatgtgtgttcaagtatgca 17496531  T
Q  228 aaatcatataattaaattcttattcttaaatcaagttctgatcctaaagtataaagac 285  Q
      |  ||| ||||||||||| | |||||| |||  |||||||||| || ||| |||||    
T  17496530 tgactatagaattaaattctaactcttaagtcatattctgatcctgaaatatgaagac 17496473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 27483783 - 27483916
Alignment:
Q  130 ttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaa 229  Q
    |||||||||| || ||||| |||||||| |||||| ||||||| |||||||||| | ||| || |||||  |||| ||||||||||||||||| | ||      
T  27483783 ttgaaccaaactgcattttatacaatgtctctgaagttttgatcataacaaagtttgaaa-gaacaatttgatatattaatgtgtgttcaagtgtgcagg 27483881  T
Q  230 atcatataattaaattcttattcttaaatcaagtt 264  Q
    | |||| ||||||||||| ||||| ||||||||||    
T  27483882 accataaaattaaattctaattctaaaatcaagtt 27483916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 264
Target Start/End: Original strand, 28574344 - 28574479
Alignment:
Q  127 gtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatac 226  Q
    ||||||||||||||||| ||||||||||||| | |||| |||||||||  ||||| ||  |||||| |||||| ||||  ||||||||||||||| || |    
T  28574344 gtgttgaaccaaaatgggttttgtacaatgtttatgaacttttgatgaacacaaaata-gaaaagaacaattgaatatagtaatgtgtgttcaagaatgc 28574442  T
Q  227 aaaatcatataattaaattcttattcttaaatcaagtt 264  Q
    |  |  |||  |||||||||||||||||||||||||||    
T  28574443 aggacaata-gattaaattcttattcttaaatcaagtt 28574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 19915848 - 19915787
Alignment:
Q  125 gtgtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtata 186  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||| ||||| ||||||||    
T  19915848 gtgtgttgaaccaaaatgaattttgtacaatgtgtctgaagttttgaagataataaagtata 19915787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 24109033 - 24109151
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    |||||||| ||||||||||||||||||||  | |||  |||||||| |||||||||   |||||| |||| | ||||||||||  |||||||||| | ||    
T  24109033 tgttgaactaaaatggattttgtacaatgcctttgatgttttgatgttaacaaagttcgaaaagaacaatagaatatgttaataagtgttcaagtgtgca 24109132  T
Q  228 aaatcatataattaaattc 246  Q
      |||||| ||||||||||    
T  24109133 ggatcataaaattaaattc 24109151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 26712985 - 26712840
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaaatcatataattaaattcttattcttaaatcaagttc 265  Q
    ||||||| |||| ||||||||||| || |||||| ||||| |||| ||||||||||| |  |  | |||||||||||||||| ||||||| ||||||||     
T  26712985 ttttgatcataataaagtataaaa-gaacaattgaatatgctaatatgtgttcaagtgtgtatgaccatataattaaattctaattcttagatcaagttt 26712887  T
Q  266 tgatcctaaagtataaagactctaaacacatatagaagcatctgaag 312  Q
    |  |  | ||  || |||||||| |||||||| ||||||||||||||    
T  26712886 ttgttttgaaacattaagactctgaacacataaagaagcatctgaag 26712840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 25563666 - 25563722
Alignment:
Q  168 ttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtata 225  Q
    ||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||    
T  25563666 ttgatgataacaaggtataaaagga-caattggatatgttaatgtgtgttcaagtata 25563722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 33013228 - 33013345
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    |||||||||||||||  ||||||| ||||   || || |||| ||||||| ||||||  |||||| |||||  ||||||||||||||||||||| || ||    
T  33013228 tgttgaaccaaaatgagttttgtataatgcccctcaagtttttatgataataaagtacgaaaagaacaattcaatatgttaatgtgtgttcaagaatgca 33013327  T
Q  228 aaatcatataattaaatt 245  Q
    | | || |||||||||||    
T  33013328 agaccacataattaaatt 33013345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 18038810 - 18038716
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    ||||||| |||||| | ||||||||||||  ||| |  |||| |||||||||| |||| |||||| |||||| ||||| |||||| |||||||||    
T  18038810 tgttgaaacaaaataggttttgtacaatgcctcttaggttttaatgataacaaggtattaaaagaacaattggatatgctaatgtatgttcaagt 18038716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 12061305 - 12061224
Alignment:
Q  154 atgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaaatcata 235  Q
    |||| |||||| |||||||||||| ||||||| |||||| |||||  ||||||||||||| ||| |||| | || |||||||    
T  12061305 atgtctctgaagttttgatgataataaagtatgaaaagaacaattagatatgttaatgtgagtttaagtgtgcagaatcata 12061224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 13897013 - 13896956
Alignment:
Q  126 tgtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagt 183  Q
    |||||||||||||||||| ||||  ||||||| ||| || ||||||||||||||||||    
T  13897013 tgtgttgaaccaaaatgggttttaaacaatgtctcttaagttttgatgataacaaagt 13896956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 14037630 - 14037573
Alignment:
Q  126 tgtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagt 183  Q
    |||||||||||||||||| ||||  ||||||| ||| || ||||||||||||||||||    
T  14037630 tgtgttgaaccaaaatgggttttaaacaatgtctcttaagttttgatgataacaaagt 14037573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 25905542 - 25905605
Alignment:
Q  126 tgtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaa 189  Q
    ||||||||||||||||| |||||| ||||||| | |||| |||||| ||||||||  |||||||    
T  25905542 tgtgttgaaccaaaatgaattttgaacaatgtctatgaagttttgaagataacaatatataaaa 25905605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 42297341 - 42297404
Alignment:
Q  201 atatgttaatgtgtgttcaagtatacaaaatcatataattaaattcttattcttaaatcaagtt 264  Q
    ||||| |||||| |||| |||| | || || |||||||||||||||| ||||||||||||||||    
T  42297341 atatgctaatgtatgttaaagtgtgcagaaccatataattaaattctaattcttaaatcaagtt 42297404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 15376062 - 15376004
Alignment:
Q  146 tttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatat 204  Q
    |||||||||||  |||||| |||||||||||| ||||||| |||||| |||||| ||||    
T  15376062 tttgtacaatgactctgaagttttgatgataataaagtattaaaagaacaattggatat 15376004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 25905617 - 25905702
Alignment:
Q  161 tgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaaatcatataattaaattct 247  Q
    |||| |||||||||||| || ||| | ||||| |||||| | |||||||||||||||||  ||| ||| | ||||||||||||||||    
T  25905617 tgaagttttgatgataataacgta-agaaagaacaattgaaaatgttaatgtgtgttcagatatgcaagaccatataattaaattct 25905702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 33241072 - 33241020
Alignment:
Q  168 ttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaa 220  Q
    |||||||||||||||||| |||||| |||||| ||||| |||| | |||||||    
T  33241072 ttgatgataacaaagtattaaaagatcaattggatatgctaatatttgttcaa 33241020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 33248993 - 33248941
Alignment:
Q  168 ttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaa 220  Q
    |||||||||||||||||| |||||| |||||| ||||| |||| | |||||||    
T  33248993 ttgatgataacaaagtattaaaagatcaattggatatgctaatatttgttcaa 33248941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 35896567 - 35896473
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||||||||||| | ||||||| |||||||||||| |||||||||||| ||||||| |||||| |||||| |||||||||||| |||||||||    
T  35896567 tgttgaaccaaaataggttttgtataatgtatctgaagttttgatgataagaaagtattaaaagaacaattgaatatgttaatgtatgttcaagt 35896473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 1615986 - 1616080
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagta 223  Q
    |||||||||||||||  ||||| |||||| ||||||| ||||||| |||||||||||| |||||| |||||  |||||||||||||||||||||||    
T  1615986 tgttgaaccaaaatgagttttgaacaatgcatctgaagttttgataataacaaagtat-aaaagaacaattagatatgttaatgtgtgttcaagta 1616080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 246
Target Start/End: Original strand, 17776713 - 17776827
Alignment:
Q  132 gaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgt-tcaagtatacaaaa 230  Q
    ||||||||||||||||||||||||||| || || |||||||||| ||||||||| |||||| ||| |  |||||||||||||||| |||||| | ||  |    
T  17776713 gaaccaaaatggattttgtacaatgtaactaaagttttgatgatgacaaagtat-aaaagatcaaattaatatgttaatgtgtgtgtcaagtgtgcagga 17776811  T
Q  231 tcatataattaaattc 246  Q
    ||||| ||||||||||    
T  17776812 tcatagaattaaattc 17776827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 30498378 - 30498323
Alignment:
Q  131 tgaaccaaaatggattttgta-caatgtatctgaaattttgatgataacaaagtat 185  Q
    |||| |||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  30498378 tgaaacaaaatggattttggaacaatgtttctgaaattttgatgataacaaagtat 30498323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 2818977 - 2819056
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaaatcatataattaaatt 245  Q
    |||||||||||||||| ||| |||||  |||||| |||||||||| | ||||||||| | || ||||||| | |||||||    
T  2818977 ttttgatgataacaaaatattaaaagtccaattggatatgttaatatttgttcaagtgtgcagaatcatagacttaaatt 2819056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 11105724 - 11105670
Alignment:
Q  137 aaaatggattttgtacaat--gtatctgaaattttgatgataacaaagtataaaa 189  Q
    |||||| ||||||||||||  || ||| |||||||||||||||||||||||||||    
T  11105724 aaaatgaattttgtacaatatgtctctaaaattttgatgataacaaagtataaaa 11105670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 43281119 - 43281172
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaa 181  Q
    ||||||| |||||| ||||||| ||||||| ||| || ||||||||||||||||    
T  43281119 tgttgaaacaaaatagattttgcacaatgtctctaaagttttgatgataacaaa 43281172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 21617113 - 21617057
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    ||||||| |||||||||||| |||||| |||||| ||||| |||| | |||||||||    
T  21617113 ttttgataataacaaagtattaaaagatcaattgaatatgctaatatttgttcaagt 21617057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 330
Target Start/End: Complemental strand, 20649153 - 20648950
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataac-aaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatac 226  Q
    |||||||||||||||  ||| |||||||   | |||| ||||||||||||| |||||||||| ||| |||||| ||||| |||| |||||| |||||| |    
T  20649153 tgttgaaccaaaatgagtttcgtacaatacctttgaagttttgatgataacaaaagtataaatagaacaattgaatatgctaatatgtgtttaagtatgc 20649054  T
Q  227 aaaatcatataattaaattcttattcttaaatcaagttctgatcctaaagtataaagactctaaacacatatagaagcatctgaagtaaataagaagccg 326  Q
    |  |||||| |||||||| | ||||||||| |||| || ||||||| || ||| |||||||| ||| ||||  | || |||||||| || | |||||| |    
T  20649053 aggatcatagaattaaatccctattcttaagtcaaattatgatcctgaattatgaagactctgaacgcataaggtagaatctgaagcaagtgagaagctg 20648954  T
Q  327 aaga 330  Q
    ||||    
T  20648953 aaga 20648950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 269
Target Start/End: Original strand, 8108763 - 8108903
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    |||||||||||||||||||||||| ||||  | ||   |||||||||||||||||||| |||||| |||| | ||||| ||||||||||||||||||  |    
T  8108763 tgttgaaccaaaatggattttgtataatgcttatgcggttttgatgataacaaagtat-aaaagaacaatggaatatgctaatgtgtgttcaagtatgta 8108861  T
Q  228 aaatcatataattaaattcttattcttaaatcaagttctgat 269  Q
      |||||| ||||| |||| || |  ||||||||||| ||||    
T  8108862 ggatcatagaattacattcataatactaaatcaagttttgat 8108903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 4523382 - 4523340
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttg 170  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  4523382 tgttgaaccaaaatggattttgtacaatgtatctgaagttttg 4523340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 9796638 - 9796553
Alignment:
Q  136 caaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||| ||||||||||||| | |||||| |||||||||||| |||||||  ||||| |||||| |||||||||| | |||||||||    
T  9796638 caaaattgattttgtacaatttctctgaagttttgatgataataaagtat-taaagaacaattggatatgttaatatatgttcaagt 9796553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 47597825 - 47597751
Alignment:
Q  201 atatgttaatgtgtgttcaagtatacaaaatcatataattaaattcttattcttaaatcaagttctgatcctaaa 275  Q
    ||||| |||||| |||||||| || ||  |||||| |||||||||||||||||||| ||||||| |||| |||||    
T  47597825 atatgctaatgtatgttcaagaatgcaggatcatagaattaaattcttattcttaagtcaagttttgattctaaa 47597751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 5797927 - 5797996
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaaatcata 235  Q
    ||||||||||||||| |||  |||||| |||||| |||||||||||| ||||||||| | || |||||||    
T  5797927 ttttgatgataacaaggtactaaaagaacaattggatatgttaatgtatgttcaagtgtgcagaatcata 5797996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 31375697 - 31375633
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaaga 192  Q
    ||||||| |||||||| |||||||| |||  |||||| ||||||||||||||| |||| ||||||    
T  31375697 tgttgaatcaaaatgggttttgtaccatgcctctgaagttttgatgataacaaggtattaaaaga 31375633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 10924632 - 10924573
Alignment:
Q  131 tgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaa-agtataaaa 189  Q
    ||||||||||||  ||||||||||||| | | |||||||||||||||||| |||||||||    
T  10924632 tgaaccaaaatgagttttgtacaatgtttttaaaattttgatgataacaagagtataaaa 10924573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 27686254 - 27686121
Alignment:
Q  130 ttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaa 229  Q
    |||||||||||| | ||||  || |||| | | ||||||||||| |||||| |||| ||  || |||||  ||||||||||||| |||||||| | ||      
T  27686254 ttgaaccaaaataggttttaaacgatgtctttaaaattttgatgttaacaatgtatgaac-gaacaattaaatatgttaatgtgcgttcaagtgtgcagg 27686156  T
Q  230 atcatataattaaattcttattcttaaatcaagtt 264  Q
    | |||| ||||||||||| | ||||||||||||||    
T  27686155 accatagaattaaattctaactcttaaatcaagtt 27686121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 12129105 - 12129202
Alignment:
Q  127 gtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtat 224  Q
    ||||||||| ||||||  |||| ||||||   ||| || |||||||||||| ||| |||||||||| |||||| ||||| |||| | |||||| ||||    
T  12129105 gtgttgaactaaaatgagttttatacaatccctcttaagttttgatgataataaaatataaaaagaacaattgaatatgctaatatatgttcatgtat 12129202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 13932360 - 13932304
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    ||||||||||||||| |||| |||||  |||||| |||||||||| | |||||||||    
T  13932360 ttttgatgataacaaggtattaaaagttcaattggatatgttaatatttgttcaagt 13932304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 19705834 - 19705778
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||||||||||||||||| |||||  |||||| ||||| |||| | |||||||||    
T  19705834 ttttgatgataacaaagtattaaaagttcaattggatatgctaatatttgttcaagt 19705778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 30701088 - 30701176
Alignment:
Q  133 aaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    ||||||||| ||  ||||||||||| |||||| |||||||||||||||||||| |||||| |||||| ||||| |||| ||| |||||||    
T  30701088 aaccaaaatcgagattgtacaatgtctctgaagttttgatgataacaaagtat-aaaagaacaattggatatgctaatatgtattcaagt 30701176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 14315211 - 14315306
Alignment:
Q  127 gtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||||| |||||||  ||||||||||||| | |||| |||||||||||||||| |||  ||| | |||||| ||||| |||| |||||||||||    
T  14315211 gtgttgaaacaaaatgacttttgtacaatgtctttgaagttttgatgataacaaactattgaaaaaacaattgaatatgctaatatgtgttcaagt 14315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 19691559 - 19691651
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaa 220  Q
    |||||||| |||||   ||||||||||||| ||| || |||||||||| ||||| |||||||||  |||||| ||||| |||||| |||||||    
T  19691559 tgttgaactaaaataagttttgtacaatgtctctaaagttttgatgattacaaaatataaaaagtacaattggatatgctaatgtatgttcaa 19691651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 27989210 - 27989151
Alignment:
Q  151 acaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaat 210  Q
    ||||||| ||| |||||||||||||| ||| |||| |||||| |||||| ||||||||||    
T  27989210 acaatgtctcttaaattttgatgatagcaatgtattaaaagatcaattggatatgttaat 27989151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 12394908 - 12394852
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||||||||||||||||| ||| || |||||  |||||||||| | |||||||||    
T  12394908 ttttgatgataacaaagtattaaatgatcaattagatatgttaatatttgttcaagt 12394852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 27941321 - 27941264
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtat 185  Q
    |||||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||    
T  27941321 tgttgaaccaaaatggattttgtaaaatatctctgaaattttgatgacaacaaagtat 27941264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 10220889 - 10220984
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtat 224  Q
    |||| ||||||||||  |||| |||||||  |||||| ||||||| ||||||||||||||||||| |||||| |||||  ||||| |||||||||||    
T  10220889 tgttaaaccaaaatgagttttatacaatgcctctgaagttttgataataacaaagtataaaaagaacaattgaatatgccaatgt-tgttcaagtat 10220984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 11010828 - 11010888
Alignment:
Q  125 gtgtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtat 185  Q
    ||||||||||||||||||| ||||| | ||||| | ||| |||||||||||||||||||||    
T  11010828 gtgtgttgaaccaaaatgggttttgaataatgtctatgatattttgatgataacaaagtat 11010888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 11442894 - 11442805
Alignment:
Q  127 gtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttc 218  Q
    ||||| |||||||||||||| |  |||||   |||||| |||||||||||||||| ||||||  || |||||| ||||||||||||||||||    
T  11442894 gtgttaaaccaaaatggattcttaacaatacctctgaagttttgatgataacaaactataaa--gaacaattgaatatgttaatgtgtgttc 11442805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 11550801 - 11550890
Alignment:
Q  127 gtgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttc 218  Q
    ||||| |||||||||||||| |  |||||   |||||| |||||||||||||||| ||||||  || |||||| ||||||||||||||||||    
T  11550801 gtgttaaaccaaaatggattcttaacaatacctctgaagttttgatgataacaaactataaa--gaacaattgaatatgttaatgtgtgttc 11550890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 264
Target Start/End: Original strand, 13976976 - 13977111
Alignment:
Q  129 gttgaaccaaaat-ggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    |||||| |||||| || ||||||||| ||  |||||| |||||||||||||||||| || || ||||||||   | ||  ||||||||||||||||| ||    
T  13976976 gttgaatcaaaattggtttttgtacattgcctctgaagttttgatgataacaaagtgtacaa-gagcaattaggtttgcgaatgtgtgttcaagtatgca 13977074  T
Q  228 aaatcatataattaaattcttattcttaaatcaagtt 264  Q
    | | |||||||||||||||  | | ||||||||||||    
T  13977075 agaccatataattaaattcaaagtattaaatcaagtt 13977111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 8863960 - 8863866
Alignment:
Q  153 aatgtatctgaaattttgatgataacaa-agtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaaatcatataattaaattct 247  Q
    ||||| |||||| ||||||| ||||||| ||||||||| || |||||| ||||| |||||||| ||||| ||| || || ||||||||||||||||    
T  8863960 aatgtctctgaagttttgataataacaagagtataaaa-gaacaattggatatgctaatgtgtattcaaatatgcagaaccatataattaaattct 8863866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 8861087 - 8860952
Alignment:
Q  153 aatgtatctgaaattttgatgataacaa-agtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaaatcatataattaaattcttatt 251  Q
    ||||| |||||| ||||||| ||||||| ||||||||| || |||||| ||||| |||||||| ||||| |||  | || | |||||||||||||| | |    
T  8861087 aatgtctctgaagttttgataataacaagagtataaaa-gaacaattggatatgctaatgtgtattcaaatatgtagaaccgtataattaaattctgact 8860989  T
Q  252 cttaaatcaagttctgatcctaaagtataaagactct 288  Q
    ||| | ||||||||| ||| | || ||| ||||||||    
T  8860988 cttgagtcaagttctaatcatgaaatatgaagactct 8860952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 10328079 - 10328137
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtat 224  Q
    ||||||||||||||| |||| |||||| |||||| ||| |||||| | |||||||||||    
T  10328079 ttttgatgataacaaggtatcaaaagatcaattggatacgttaatatttgttcaagtat 10328137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 11701084 - 11700968
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    ||||||| |||||||| ||||| | ||||| | |||  ||||||| ||||||||||||  |||||  ||||  |||||||||| | ||||||||||| ||    
T  11701084 tgttgaatcaaaatgggttttgaaaaatgtttatgatgttttgataataacaaagtat-gaaagaataattagatatgttaatatttgttcaagtatgca 11700986  T
Q  228 aaatcatataattaaatt 245  Q
     ||| ||| |||||||||    
T  11700985 taattatagaattaaatt 11700968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 8677231 - 8677286
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||||||||||||||||| |||| | |||||| |||||||||| | |||||||||    
T  8677231 ttttgatgataacaaagtattaaaa-aacaattgaatatgttaatatatgttcaagt 8677286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 9677 - 9791
Alignment:
Q  130 ttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaa 229  Q
    ||||||||||| |||||||  ||||||  |||||||||||  |||||||||| ||| |||||| |||||| |||||  |||||||||||||||||   ||    
T  9677 ttgaaccaaaaaggattttaaacaatgcctctgaaattttattgataacaaaatat-aaaagaacaattggatatgccaatgtgtgttcaagtatgtgaa 9775  T
Q  230 atcatataattaaatt 245  Q
    | |||| |||||||||    
T  9776 accataaaattaaatt 9791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 20070 - 20184
Alignment:
Q  130 ttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaa 229  Q
    ||||||||||| |||||||  ||||||  |||||||||||| |||||||||||| | ||||||  ||||| |||||  |||||| |||||||||| | ||    
T  20070 ttgaaccaaaaaggattttaaacaatgcctctgaaattttgttgataacaaagt-ttaaaagaaaaattgaatatgccaatgtgcgttcaagtatgcgaa 20168  T
Q  230 atcatataattaaatt 245  Q
    | |||| |||||||||    
T  20169 accataaaattaaatt 20184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 6587136 - 6587215
Alignment:
Q  145 ttttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtat 224  Q
    |||| |||||||  |||||| ||||||| |||||||||| || ||||| |||||| |||||||||||| |||| ||||||    
T  6587136 ttttatacaatgcctctgaagttttgattataacaaagtctagaaagaacaattggatatgttaatgtatgtttaagtat 6587215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 12012027 - 12012134
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtataca 227  Q
    |||||||||||||| |||||| |  ||||| | | ||  |||||||||| |||| ||||||||||  ||||  |||||||||||| |||||||||||| |    
T  12012027 tgttgaaccaaaattgattttatgtaatgtttttaaagatttgatgatagcaaaatataaaaagaagaattaaatatgttaatgtatgttcaagtatata 12012126  T
Q  228 aaatcata 235  Q
    | ||||||    
T  12012127 agatcata 12012134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 17937748 - 17937691
Alignment:
Q  164 aattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaag 221  Q
    ||||||||||||||||| |||| |||||| |||||| |||||||||| | ||||||||    
T  17937748 aattttgatgataacaaggtattaaaagatcaattggatatgttaatatttgttcaag 17937691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 24070719 - 24070799
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaa 209  Q
    |||| ||||||||||| |||| | |||||  ||| || |||||||||||||||||||||||||||  ||||| |||||||||    
T  24070719 tgttcaaccaaaatgggtttttt-caatgcctctaaagttttgatgataacaaagtataaaaagaataattggatatgttaa 24070799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 17872015 - 17872093
Alignment:
Q  166 ttttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaaatcatataattaaatt 245  Q
    ||||||||||||||| |||||||| || |||||  ||||| |||| ||||||||||||| ||  |||||| |||||||||    
T  17872015 ttttgatgataacaatgtataaaa-gaacaatttgatatgctaatttgtgttcaagtatgcaggatcatagaattaaatt 17872093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 5346195 - 5346078
Alignment:
Q  129 gttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaa 228  Q
    ||||||||||||||  ||||| ||||| | || ||| | ||||| ||| ||| |||||||  ||||||||| ||||| ||| |||||||||||||| |      
T  5346195 gttgaaccaaaatgagttttgaacaatatctcggaagtcttgattatatcaatgtataaag-gagcaattggatatgctaacgtgtgttcaagtatgcgt 5346097  T
Q  229 aatcatataattaaattct 247  Q
    || |||| |||||||||||    
T  5346096 aaccataaaattaaattct 5346078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 12863874 - 12863789
Alignment:
Q  136 caaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||| || ||||||||||||  ||||| ||||||||||||||||||||   || | |||||| |||||||||| |||||| ||||    
T  12863874 caaaattgaatttgtacaatgtcactgaagttttgatgataacaaagtat-tgaacaacaattggatatgttaatatgtgtttaagt 12863789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 13281689 - 13281596
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    ||||||||||||||||||| || | ||||| | |||| |||||||||||| || |||| |||| | |||||  |||||||||| | |||||||||    
T  13281689 tgttgaaccaaaatggattgtgaataatgtttatgaagttttgatgataataaggtatgaaaa-aacaatttaatatgttaatatttgttcaagt 13281596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 27740297 - 27740227
Alignment:
Q  151 acaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaag 221  Q
    |||||| |||| || |||||| ||||||||||||| |||||  |||||| |||||||||| | ||||||||    
T  27740297 acaatgcatcttaagttttgaggataacaaagtattaaaagttcaattgaatatgttaatatttgttcaag 27740227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 13581587 - 13581648
Alignment:
Q  163 aaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtat 224  Q
    |||||||||||||||| | |||| |||||  |||||| |||||||||| | |||||||||||    
T  13581587 aaattttgatgataacgaggtattaaaagttcaattgcatatgttaatatttgttcaagtat 13581648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 19711329 - 19711382
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaa 181  Q
    ||||||| |||||||||||||||||||||| ||| || ||| | ||||||||||    
T  19711329 tgttgaaacaaaatggattttgtacaatgtctctaaagtttcgctgataacaaa 19711382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 270
Target Start/End: Original strand, 29092574 - 29092703
Alignment:
Q  136 caaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagtatacaaaatcata 235  Q
    |||||||  ||||||||||||| | | || ||||||  ||||||| |||||||| || |||||||    | |||||||||||||||||| ||  ||||||    
T  29092574 caaaatgagttttgtacaatgtctttaaagttttgacaataacaacgtataaaa-gaacaattgt----gctaatgtgtgttcaagtatgcatgatcata 29092668  T
Q  236 taattaaattcttattcttaaatcaagttctgatc 270  Q
     ||||||||||  | | |||||||||||| |||||    
T  29092669 aaattaaattcaaagtattaaatcaagttttgatc 29092703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 1655 - 1561
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||| ||||||||  |||| ||| |||  |||||| ||||||| |||||||||| || ||| | |||||| ||||||||||||||||| ||||    
T  1655 tgttgagccaaaatgtgttttatacgatgcctctgaagttttgattataacaaagtctagaaaaaacaattggatatgttaatgtgtgtttaagt 1561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 319031 - 319124
Alignment:
Q  128 tgttgaaccaaaatggattttgtacaatgtatctgaaattttgatgataacaaagtataaaaagagcaattgtatatgttaatgtgtgttcaagt 222  Q
    |||||||  ||||||| ||||||||||||  | | || ||||||||||||||||||||  ||| | |||||  |||||||||| |||||||||||    
T  319031 tgttgaataaaaatgggttttgtacaatgcctttaaagttttgatgataacaaagtattgaaa-aacaattagatatgttaatatgtgttcaagt 319124  T

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