View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_6 (Length: 654)
Name: NF1348_low_6
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_6 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 200 - 642
Target Start/End: Complemental strand, 72736 - 72294
Alignment:
| Q |
200 |
ttgtatcacttggtgcacaaaagtcaaccaagttaatacgatgttacaaaactaattatagataaacataataataatagtgcaggtaatgagatcactt |
299 |
Q |
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| T |
72736 |
ttgtatcacttgatgcacaaaagttaaccaagttaatacgatgttacaaaactaattatagatagacataataataatagtgcaggtaatgagatcactt |
72637 |
T |
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| Q |
300 |
cttctcctgtttgattagcttcaccctcttggatgaagagtgcttggcaagagggatttcatcatggttgcgtggctaaggaacggcaaatgtgacctta |
399 |
Q |
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| T |
72636 |
cttctcctgtttgattagcttcaccctcttgaatgaagagtgcttggcaagagggatttcatcatggttgcgtggctaaggaacgacaaatgtgacctta |
72537 |
T |
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| Q |
400 |
ggagtcacaaaagttgttttagcagggggtggggcattgaagagtgtttgtcccatccttaacaacagcccatttgtctttaaccctcacaactagcttc |
499 |
Q |
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| T |
72536 |
ggagtcacatgagttgtttcagcagggggtggggcattgaagagtgcttgtcccatccttaacaacggtccatttgtctttaactctcacaactagcttc |
72437 |
T |
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| Q |
500 |
caaaaatctttcttctgattaatatcaccgataaattgaaatggtctcaccaacatgattgatctgataataaagagaaacaaatatgttagaatagcaa |
599 |
Q |
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| T |
72436 |
caaaaatctttcttctgattaatatcaccgataaattgaaatggtctcaccaacatgattgatctgataataaagagaaacaaatatgttagaatagcaa |
72337 |
T |
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| Q |
600 |
actcatccggcttaataaagcttctcttttgaatagcaatatt |
642 |
Q |
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| T |
72336 |
actcatccggcttaataaagcttctcttttgaatagcgatatt |
72294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 73170 - 73013
Alignment:
| Q |
30 |
gtatgtatagtgggtattgatatattcagagtagtcacgcgaataaaagagtgtttgggacataagatttcagttttgtttggatccaataaatgaaaac |
129 |
Q |
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| T |
73170 |
gtatgtatagtgggtattgatatattcagagtagtcacgcgaataaaagagtgtttgggacataagatttcagttttgtttggatccaataaatgaaaac |
73071 |
T |
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| Q |
130 |
cagtaaggtttgtttgagagacttaaagacttaatcaataggttataacattgtacaa |
187 |
Q |
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| T |
73070 |
cagtaaggtttgtttgagagacttaaagacttaatcaataggttataacattgtacaa |
73013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 450 - 642
Target Start/End: Complemental strand, 20993884 - 20993691
Alignment:
| Q |
450 |
tcccatccttaacaacagcccatttgtctttaaccctcacaactagcttccaaaaatctttcttctgattaatatcaccgataaattgaaatggtctcac |
549 |
Q |
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| T |
20993884 |
tcccatccttaacaacaacccatttgtctttcaccctcacagccagcttccagaaatcctttttcgggttaatatcagcaataaattgaactggtgtcac |
20993785 |
T |
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| Q |
550 |
caacatgattgatctgataataaagagaaacaaatatgttagaatagcaaactca-tccggcttaataaagcttctcttttgaatagcaatatt |
642 |
Q |
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| T |
20993784 |
caacatgattgatctgacaataaagacaaacaaatatgttagaatagcaaactgaggccgccttaataaagcttctcttttgaataacaatatt |
20993691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 454 - 551
Target Start/End: Original strand, 20221005 - 20221102
Alignment:
| Q |
454 |
atccttaacaacagcccatttgtctttaaccctcacaactagcttccaaaaatctttcttctgattaatatcaccgataaattgaaatggtctcacca |
551 |
Q |
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| T |
20221005 |
atccttaacaatggcccatttgtctttaaccctaacagctagcttccagaaatctttcttctggttaatatcaccgataaattgaaatggtcttacca |
20221102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 22078801 - 22078842
Alignment:
| Q |
298 |
ttcttctcctgtttgattagcttcaccctcttggatgaagag |
339 |
Q |
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| T |
22078801 |
ttcttctcctgtttaatcagcttcaccctctttgatgaagag |
22078842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 510
Target Start/End: Original strand, 22081561 - 22081621
Alignment:
| Q |
450 |
tcccatccttaacaacagcccatttgtctttaaccctcacaactagcttccaaaaatcttt |
510 |
Q |
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| T |
22081561 |
tcccatccttgaccacagtccacttgtctttaaccctaacagccaacttccaaaaatcttt |
22081621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 510
Target Start/End: Original strand, 3334244 - 3334304
Alignment:
| Q |
450 |
tcccatccttaacaacagcccatttgtctttaaccctcacaactagcttccaaaaatcttt |
510 |
Q |
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| T |
3334244 |
tcccatccttgaccacagtccacttgtctttaaccctaacagccaacttccaaaaatcttt |
3334304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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