View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_60 (Length: 330)
Name: NF1348_low_60
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 95 - 327
Target Start/End: Original strand, 35074288 - 35074520
Alignment:
| Q |
95 |
gtagctaccggaagagtgacaaccaaagtggatgtttacgcatttggagtagttttgatggaactgatcacaggtcgaaaggcattagatgattctgtgc |
194 |
Q |
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| T |
35074288 |
gtagctactggaagagtgacaaccaaagtggatgtttacgcatttggagtagttttgatggaactgatcacaggtcgaaaggcattagatgattctgtgc |
35074387 |
T |
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| Q |
195 |
ccgatgaaagttctcatttggttacgtggttccgtagggtactgactaacaaggaaaacattccaaaggcaattgatcaaactctcgacccggacgagga |
294 |
Q |
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| T |
35074388 |
ccgatgaaagttctcatttggttacgtggttccgtagggtactgactaacaaggaaaacattccaaaggcaattgatcaaactctcgacccggacgagga |
35074487 |
T |
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| Q |
295 |
aacaatgttgagcatatataaagtggctgagct |
327 |
Q |
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| T |
35074488 |
aacaatgttgagcatatataaagtggctgagct |
35074520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 104 - 327
Target Start/End: Complemental strand, 38159013 - 38158790
Alignment:
| Q |
104 |
ggaagagtgacaaccaaagtggatgtttacgcatttggagtagttttgatggaactgatcacaggtcgaaaggcattagatgattctgtgcccgatgaaa |
203 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||| ||| ||||||||||||| || |||| || |||| |
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| T |
38159013 |
ggaagagtgacaaccaaagtagatgtttacgcatttggagtagttctgatggaactgattactggtagaagggcattagatgatactatgcctgacgaaa |
38158914 |
T |
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| Q |
204 |
gttctcatttggttacgtggttccgtagggtactgactaacaaggaaaacattccaaaggcaattgatcaaactctcgacccggacgaggaaacaatgtt |
303 |
Q |
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| T |
38158913 |
gatctcatttggtttcatggttccgtagggtactagtcaacaaggagaatatccctaaagcaattgatcaaacgctcaaccccgatgaagaaaccatgga |
38158814 |
T |
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| Q |
304 |
gagcatatataaagtggctgagct |
327 |
Q |
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| T |
38158813 |
gagcatatataaaattgctgagct |
38158790 |
T |
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