View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_62 (Length: 324)
Name: NF1348_low_62
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 11672490 - 11672690
Alignment:
| Q |
48 |
actttggatacaacaacatatatgtaataatagatttggtaaatacaaaccaatcttttaaagtgattgactttgacnnnnnnnatagtcataacaaacg |
147 |
Q |
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| T |
11672490 |
actttggatacaacaacatatatgtaataatagatttggtaaatacaaaccaatcttttaaagtgattgactttgactttttttatagtcataacaaacg |
11672589 |
T |
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| Q |
148 |
aaatagaaataagaaattgccttctttaaagtttaaaatgccaatcttgagtctgaaga---------tatccttggaataagaattttgtcaccaatat |
238 |
Q |
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| T |
11672590 |
aaatagaaataagaaattgccttctttaaagtttaaaatgccaatcttgagtctgaagataccaaatctatccttggaataagaattttgtcaccaatat |
11672689 |
T |
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| Q |
239 |
t |
239 |
Q |
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| T |
11672690 |
t |
11672690 |
T |
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