View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_63 (Length: 319)
Name: NF1348_low_63
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 42 - 272
Target Start/End: Complemental strand, 6194236 - 6194005
Alignment:
| Q |
42 |
tttgacaatttcatgatcatcatctctcttaatatgtaaatatggtacaattttatctatgaacctaagatgtttcaatctttcttattggaatatcaaa |
141 |
Q |
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| T |
6194236 |
tttgacaatttcatgatcatcatctctcttaatatgtaaatatggtacaattttatctatgaacctaaaatgtttcaatctttcttattggaatatcaaa |
6194137 |
T |
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| Q |
142 |
atgacaaacaaaa-gaaacacttgtaaaagaataaattcgtctgaattctgttcataattaaaagaacatttgagatgaaattgactttgtccgaaattt |
240 |
Q |
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| T |
6194136 |
atgaaaaacaaaaagaaacacttgtaaaagaataaattcgtctgaattctgtccataattaaaagaacatttgagatgaaattgattttgtccgaaattt |
6194037 |
T |
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| Q |
241 |
catctgaaaatggcaattttctagtaataaat |
272 |
Q |
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| T |
6194036 |
catctgaaaatggcaattttctagtaataaat |
6194005 |
T |
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