View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_66 (Length: 306)
Name: NF1348_low_66
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 279
Target Start/End: Original strand, 31999062 - 31999312
Alignment:
| Q |
29 |
gaaatttcagtcaatgtattgaaacaaaataatgttggattttgaattttctaataacatttccatttttatagttctattgtattcattttgaactcag |
128 |
Q |
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| T |
31999062 |
gaaatttcagtcaatgtattgaaacaaaataatgttggattttgaattttctaataacatttccatttttatagttctattgtattcattttgaactcag |
31999161 |
T |
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| Q |
129 |
gtctttactagtggcttttcttgagtattttatggttatgtnnnnnnnntactcatcaagatgcaatctcatagttcagttttgtattttcagataaaca |
228 |
Q |
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| T |
31999162 |
gtctttactagtggcttttcttgagtattttatggttatgtaaaaaaaatactcatcaagatgcaatctcatagttcagttttgtattttcagataaaca |
31999261 |
T |
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| Q |
229 |
gatgaataaaggtaaagataaagttgtgaagttgaactgattgtgaatatt |
279 |
Q |
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| T |
31999262 |
gatgaataaaggtaaagataaagttgtgaaattgaactgattgtgaatatt |
31999312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 32005468 - 32005553
Alignment:
| Q |
82 |
ataacatttccatttttatagttctattgtattcattttgaactcaggtctttactagtggcttttcttgagtattttatggttat |
167 |
Q |
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| T |
32005468 |
ataacattcccattattatagttgtacggtattcattttgaatttaggtctttactagtgccttttctttagtactttatggttat |
32005553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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