View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_82 (Length: 262)
Name: NF1348_low_82
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 6932549 - 6932752
Alignment:
| Q |
21 |
ccacagatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaacataaaggttaataaaccctcttaaaaatggttagcaaagaa |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
6932549 |
ccactgatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaacctaaaggttaataaaccttcttaaaaatggttagcaaagaa |
6932648 |
T |
|
| Q |
121 |
atattgacaactactcaaataatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactt |
220 |
Q |
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| T |
6932649 |
atattaacaactactcaaattatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactt |
6932748 |
T |
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| Q |
221 |
tatg |
224 |
Q |
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|||| |
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| T |
6932749 |
tatg |
6932752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 6485994 - 6485910
Alignment:
| Q |
140 |
taatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactttatg |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485994 |
taatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactttatg |
6485910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 6486061 - 6485990
Alignment:
| Q |
21 |
ccacagatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaacataaaggttaata |
92 |
Q |
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|||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6486061 |
ccactgatatatgttattcaccttcgagaaatcctagtataggctaataaacaggaaacataaaggttaata |
6485990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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