View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348_low_83 (Length: 257)

Name: NF1348_low_83
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348_low_83
NF1348_low_83
[»] chr2 (12 HSPs)
chr2 (121-228)||(28741270-28741377)
chr2 (75-228)||(19616340-19616493)
chr2 (79-228)||(15342247-15342397)
chr2 (122-228)||(29800419-29800525)
chr2 (76-159)||(21626586-21626670)
chr2 (172-222)||(12098593-12098643)
chr2 (129-206)||(28719047-28719124)
chr2 (172-227)||(24250277-24250332)
chr2 (24-59)||(28741387-28741422)
chr2 (172-227)||(30174379-30174434)
chr2 (172-206)||(18796688-18796722)
chr2 (172-228)||(24229459-24229515)
[»] chr5 (20 HSPs)
chr5 (75-228)||(20100487-20100641)
chr5 (75-228)||(12765238-12765391)
chr5 (75-228)||(5097555-5097709)
chr5 (75-228)||(7865678-7865831)
chr5 (75-228)||(12704122-12704275)
chr5 (75-228)||(9811981-9812134)
chr5 (75-216)||(39535368-39535510)
chr5 (75-228)||(26245006-26245160)
chr5 (172-228)||(31267906-31267962)
chr5 (75-227)||(25805630-25805785)
chr5 (75-228)||(26129937-26130091)
chr5 (76-196)||(31652060-31652181)
chr5 (172-228)||(24933550-24933606)
chr5 (172-228)||(31096818-31096874)
chr5 (172-227)||(31901-31956)
chr5 (172-227)||(12789908-12789963)
chr5 (172-227)||(20941029-20941084)
chr5 (172-227)||(23545924-23545979)
chr5 (172-206)||(19707209-19707243)
chr5 (172-206)||(19714489-19714523)
[»] chr4 (27 HSPs)
chr4 (75-228)||(30040718-30040872)
chr4 (79-228)||(11420924-11421074)
chr4 (75-228)||(19365423-19365577)
chr4 (91-228)||(9537881-9538017)
chr4 (88-228)||(5528723-5528864)
chr4 (131-228)||(32636446-32636542)
chr4 (172-228)||(18163164-18163220)
chr4 (75-227)||(5870320-5870475)
chr4 (75-227)||(17300204-17300359)
chr4 (75-227)||(34975453-34975608)
chr4 (75-228)||(1941628-1941782)
chr4 (172-225)||(5616397-5616450)
chr4 (172-228)||(4676227-4676283)
chr4 (172-228)||(19362412-19362468)
chr4 (172-228)||(20243939-20243995)
chr4 (172-227)||(2677015-2677070)
chr4 (172-227)||(3369268-3369323)
chr4 (172-227)||(15461499-15461554)
chr4 (172-227)||(15815023-15815078)
chr4 (172-227)||(18111288-18111343)
chr4 (172-227)||(26531615-26531670)
chr4 (172-206)||(4426595-4426629)
chr4 (75-228)||(9487455-9487609)
chr4 (172-206)||(10677546-10677580)
chr4 (172-206)||(10891186-10891220)
chr4 (172-206)||(28393125-28393159)
chr4 (111-228)||(4546021-4546138)
[»] scaffold0466 (1 HSPs)
scaffold0466 (79-228)||(13193-13343)
[»] chr6 (17 HSPs)
chr6 (75-228)||(4073480-4073634)
chr6 (75-228)||(20736572-20736726)
chr6 (75-228)||(8612820-8612973)
chr6 (123-228)||(22560428-22560533)
chr6 (75-201)||(21994492-21994619)
chr6 (93-159)||(23846700-23846767)
chr6 (129-228)||(19218389-19218487)
chr6 (137-228)||(10359294-10359384)
chr6 (75-228)||(1586352-1586508)
chr6 (75-228)||(14074382-14074538)
chr6 (172-227)||(13995188-13995243)
chr6 (172-227)||(16789073-16789128)
chr6 (172-227)||(18020086-18020141)
chr6 (172-227)||(22860133-22860188)
chr6 (172-206)||(188968-189002)
chr6 (75-228)||(5758725-5758878)
chr6 (172-206)||(11651905-11651939)
[»] scaffold0031 (1 HSPs)
scaffold0031 (75-228)||(40232-40386)
[»] chr8 (16 HSPs)
chr8 (75-228)||(20539641-20539798)
chr8 (75-228)||(18835254-18835408)
chr8 (75-228)||(2963180-2963332)
chr8 (75-228)||(22659738-22659894)
chr8 (75-227)||(8371498-8371653)
chr8 (172-228)||(45534517-45534573)
chr8 (172-227)||(12562125-12562180)
chr8 (172-227)||(21916678-21916733)
chr8 (172-227)||(22130854-22130909)
chr8 (172-227)||(27007762-27007817)
chr8 (172-227)||(27014905-27014960)
chr8 (172-227)||(27880732-27880787)
chr8 (172-227)||(28020913-28020968)
chr8 (172-227)||(28498495-28498550)
chr8 (172-206)||(24642831-24642865)
chr8 (172-228)||(26240486-26240542)
[»] chr7 (29 HSPs)
chr7 (75-228)||(3587813-3587967)
chr7 (75-228)||(19393668-19393822)
chr7 (75-228)||(28130465-28130619)
chr7 (75-228)||(24443571-24443724)
chr7 (88-228)||(19388469-19388610)
chr7 (76-221)||(15170280-15170428)
chr7 (75-228)||(2935935-2936089)
chr7 (75-228)||(15999886-16000040)
chr7 (75-228)||(18259368-18259522)
chr7 (75-228)||(47167103-47167257)
chr7 (112-228)||(25846139-25846255)
chr7 (75-228)||(14586070-14586224)
chr7 (91-227)||(31190688-31190825)
chr7 (75-228)||(15729653-15729809)
chr7 (132-228)||(25845720-25845816)
chr7 (77-227)||(19230792-19230945)
chr7 (111-227)||(5982956-5983072)
chr7 (172-228)||(10669146-10669202)
chr7 (172-228)||(41681217-41681273)
chr7 (172-227)||(2204554-2204609)
chr7 (172-227)||(8465001-8465056)
chr7 (172-227)||(18139583-18139638)
chr7 (172-227)||(18400106-18400161)
chr7 (172-227)||(18407090-18407145)
chr7 (172-227)||(19859124-19859179)
chr7 (172-227)||(30254140-30254195)
chr7 (172-227)||(48808741-48808796)
chr7 (172-206)||(18561189-18561223)
chr7 (75-228)||(34128478-34128631)
[»] scaffold0136 (1 HSPs)
scaffold0136 (76-228)||(8636-8789)
[»] scaffold0034 (1 HSPs)
scaffold0034 (76-228)||(83259-83412)
[»] chr3 (13 HSPs)
chr3 (75-228)||(15526658-15526811)
chr3 (123-228)||(14146974-14147079)
chr3 (75-228)||(25978972-25979126)
chr3 (75-228)||(11787491-11787645)
chr3 (74-228)||(55426922-55427079)
chr3 (172-227)||(12299913-12299968)
chr3 (172-227)||(14890393-14890448)
chr3 (172-227)||(15846781-15846836)
chr3 (172-227)||(20147799-20147854)
chr3 (172-227)||(21034240-21034295)
chr3 (172-206)||(13516993-13517027)
chr3 (172-206)||(17200175-17200209)
chr3 (75-145)||(28088120-28088192)
[»] scaffold0376 (1 HSPs)
scaffold0376 (75-228)||(11774-11927)
[»] chr1 (16 HSPs)
chr1 (75-228)||(8727568-8727725)
chr1 (77-228)||(633840-633992)
chr1 (75-227)||(19706684-19706839)
chr1 (76-228)||(35930485-35930640)
chr1 (75-226)||(29096628-29096778)
chr1 (172-227)||(9456118-9456173)
chr1 (172-227)||(20391484-20391539)
chr1 (172-227)||(20779890-20779945)
chr1 (172-227)||(22670502-22670557)
chr1 (172-227)||(42817234-42817289)
chr1 (172-227)||(43802610-43802665)
chr1 (172-227)||(47667719-47667774)
chr1 (172-206)||(16359026-16359060)
chr1 (178-228)||(26923628-26923678)
chr1 (172-206)||(27310568-27310602)
chr1 (98-206)||(3855910-3856017)
[»] scaffold0086 (1 HSPs)
scaffold0086 (88-228)||(53682-53823)
[»] scaffold0063 (2 HSPs)
scaffold0063 (75-208)||(45212-45346)
scaffold0063 (172-206)||(5711-5745)
[»] scaffold0378 (1 HSPs)
scaffold0378 (75-227)||(8207-8362)
[»] scaffold0006 (1 HSPs)
scaffold0006 (75-228)||(67618-67772)
[»] scaffold0264 (1 HSPs)
scaffold0264 (172-227)||(3920-3975)
[»] scaffold0112 (1 HSPs)
scaffold0112 (172-227)||(185-240)
[»] scaffold0001 (1 HSPs)
scaffold0001 (172-227)||(130469-130524)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 28741377 - 28741270
Alignment:
Q  121 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28741377 aatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtatgtagactgatgatcacatctcatgcgtcatgaatat 28741278  T
Q  221 gagatatt 228  Q
    ||||||||    
T  28741277 gagatatt 28741270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 19616340 - 19616493
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||  ||| | ||||||| ||||||||| ||||||||||||| | || |||   ||    
T  19616340 tgacttaatcataagattacattaacataaagaacactattcttaaatgtatttgtagtcaagctttaatatgaattgggataata-ataagcgtcgaga 19616438  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||| ||||||||||| ||||| ||||| |||||||    
T  19616439 ctattatgtatgtagactgatgaccacatctcatgagtcataaatattagatatt 19616493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 15342397 - 15342247
Alignment:
Q  79 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 177  Q
    ||||| || ||||||||||| |||||| |||||||||||| ||  ||| | |||||||  ||||||||||||||||||||||  ||| |||   ||||||    
T  15342397 ttaatcatgagattacattaccataaagaacactattctttaatgtatatgtagtcaagatttaatataaattgggataataataaagcgtggagactat 15342298  T
Q  178 tatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||| |||||| |||||| |  |||||||| |||||  ||||||||||||    
T  15342297 tatgtatgtagattgatgaccgaatctcatgggtcattgatatgagatatt 15342247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 29800419 - 29800525
Alignment:
Q  122 atatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatg 221  Q
    |||| |||| |||| |||||||| ||||||||||||||  ||| || |  ||||||||||| |||||||||||||||||||| |||| |||||| || ||    
T  29800419 atatatatattcaagctttaatacaaattgggataataataaagcggaaagactattatgtatgtagactgatgatcacatcccatgggtcatggatgtg 29800518  T
Q  222 agatatt 228  Q
    |||||||    
T  29800519 agatatt 29800525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 21626586 - 21626670
Alignment:
Q  76 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 159  Q
    |||||||| || | |||||||||||||||| |||| ||||||||||| ||||   ||||||| ||||||||||| ||||||||||    
T  21626586 gacttaatcatgacattacattaacataaagaacaatattcttaaaagtatccgaagtcaaattttaatataaaatgggataata 21626670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 12098643 - 12098593
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatga 222  Q
    ||||||||||| |||||||||||||||| |||||||| ||||| |||||||    
T  12098643 gactattatgtatgtagactgatgatcagatctcatgggtcataaatatga 12098593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 28719124 - 28719047
Alignment:
Q  129 tagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||  |||| ||||||||| |||||||  ||||||||  ||||||||||| ||||||||||||| || ||||||    
T  28719124 tagtcaagttttagtataaattgagataataataaaacgtagagactattatgtatgtagactgatgaccatatctca 28719047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 24250332 - 24250277
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  24250332 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 24250277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 28741422 - 28741387
Alignment:
Q  24 ttattatgcttgttgtaagattaataaagagatagt 59  Q
    ||||||| ||||||||||||||||||||||||||||    
T  28741422 ttattatacttgttgtaagattaataaagagatagt 28741387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 30174379 - 30174434
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  30174379 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 30174434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 18796688 - 18796722
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  18796688 gactattatgtgggtagactgatgatcacatctca 18796722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 24229515 - 24229459
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | |||||||||  ||||  ||||||||||||    
T  24229515 gactattatgtatgtagactgatgaccgcatctcatggttcatagatatgagatatt 24229459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 20100641 - 20100487
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||||| |||| |||  ||||||||||  |||   |||| ||||||||||||||||||||||||||  ||| |||   ||    
T  20100641 tgacttaatcatgagattacattaacgtaaataacgttattcttaaatgtattcgtagttaaactttaatataaattgggataataataaagcgtcacga 20100542  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  20100541 ctattatgtatgtagactgatgatcacatctcatgggtcatgaatatgagatatt 20100487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 12765391 - 12765238
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||||| || ||||||||  ||| |||   ||    
T  12765391 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatataa-ttaggataataataaagcgtcgaga 12765293  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||| ||||||||||| || ||  ||||||||||||    
T  12765292 ctattatgtatgtagactgatgaccacatctcatgggttatagatatgagatatt 12765238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 5097555 - 5097709
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||| | |||||||  |||||||| |||| ||||||||  ||| |||   ||    
T  5097555 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatttgtagtcaagttttaatatgaattaggataataataaagcgtcgaga 5097654  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| |||||||||||||  |||||||||| |||||  ||||||||||||    
T  5097655 ctattatgtatgtagactgatgactacatctcatgggtcatagatatgagatatt 5097709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 7865831 - 7865678
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||||| || ||||||||  ||| |||   ||    
T  7865831 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatataa-ttaggataataataaagcgtcgaga 7865733  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||| | ||||||||| || ||  ||||||||||||    
T  7865732 ctattatgtatgtagactgatgaccgcatctcatgggttatagatatgagatatt 7865678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 12704275 - 12704122
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||||| || ||||||||  ||| |||   ||    
T  12704275 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatataa-ttaggataataataaagcgtcgaga 12704177  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||| ||||| ||||||||||||| ||||||||||| || ||  ||||||||||||    
T  12704176 ctactatgtatgtagactgatgaccacatctcatgggttatagatatgagatatt 12704122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 9812134 - 9811981
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| ||||||||| |||||  ||||  ||||||| ||||||||||| || ||||||||  ||| |||   ||    
T  9812134 tgacttaatcatgagattacattatcataaagaacactattattaaatgtatccgtagtcaagctttaatataa-ttaggataataataaagcgtcgaga 9812036  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||| ||||| ||||||||||||| ||||||||||| || ||  ||||||||||||    
T  9812035 ctactatgtatgtagactgatgaccacatctcatgggttatagatatgagatatt 9811981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 39535368 - 39535510
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| | |||| |||  ||||||||||  ||||  || |||||||||||||| |||||||||||||  ||| |||   ||    
T  39535368 tgacttaatcatgagattacattaccttaaagaacgatattcttaaatgtatccgtactcaaactttaatatgaattgggataataataaagcgtcaaga 39535467  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatga 216  Q
    ||||||||| ||||||||||||| ||||||||||  |||||||    
T  39535468 ctattatgtatgtagactgatgaccacatctcataggtcatga 39535510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 26245006 - 26245160
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| ||   ||||||||||  ||||| || |||| ||||||||| |||  ||||||||  ||| |||   ||    
T  26245006 tgacttaatcatgagattacattatcataaagaatgttattcttaaatgtatctgtaatcaagctttaatatgaataaggataataataaagcgtcgaga 26245105  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||||  ||||||||| |||||  ||||||||||||    
T  26245106 ctattatgtatgtagactgatgattgcatctcatgggtcatagatatgagatatt 26245160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 31267962 - 31267906
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||| ||||| ||||||||||  |||||||||||||||||||    
T  31267962 gactattatgtatgtagacggatgaccacatctcattagtcatgaatatgagatatt 31267906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 25805785 - 25805630
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| | |||| ||| ||||||||||| |||||  ||||| || ||||||||| |||   ||||||||  ||| |||       
T  25805785 tgacttaatcatgagattacattatcttaaagaacgctattcttaaatatatccgtagtcgaagctttaatatgaataaaggataataataaagcgtcga 25805686  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  25805685 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 25805630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 26130091 - 26129937
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    |||||||||  ||| ||||| ||||||| || ||| || ||||||||  ||||  ||||||| |||||||||||||||||||||||  ||| || |  ||    
T  26130091 tgacttaatcctaatattactttaacattaagaacgctcttcttaaatgtatccgtagtcaagctttaatataaattgggataataataaagcgcagaga 26129992  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
     |||||||| |||||||| || | || |||||||| || ||| |||| |||||||    
T  26129991 atattatgtatgtagactaattaccatatctcatgggttatggatattagatatt 26129937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 31652181 - 31652060
Alignment:
Q  76 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 174  Q
    ||||||||  |||||||||||||||||||| || | ||||||||||| | || || ||| | ||||| ||||||||| || ||||  ||||| ||  |||    
T  31652181 gacttaatcgtaagattacattaacataaagaatattattcttaaaagtttccatggtcgagctttattataaattgagacaatagtaaaacatagagac 31652082  T
Q  175 tattatgtgtgtagactgatga 196  Q
    || ||||| |||||||||||||    
T  31652081 tactatgtatgtagactgatga 31652060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 24933606 - 24933550
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  24933606 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 24933550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 31096818 - 31096874
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  31096818 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 31096874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 31901 - 31956
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  31901 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 31956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 12789963 - 12789908
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  12789963 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 12789908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 20941029 - 20941084
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  20941029 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 20941084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 23545924 - 23545979
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  23545924 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 23545979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 19707243 - 19707209
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  19707243 gactattatgtgggtagactgatgatcacatctca 19707209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 19714523 - 19714489
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  19714523 gactattatgtgggtagactgatgatcacatctca 19714489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 30040872 - 30040718
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||  ||||||||||||| | ||||||| |||||||||||||  ||| | |   ||    
T  30040872 tgacttaatcatgagattacattaacataaagaacactattcttaaatgtatctatagtcaagcgttaatatgaattgggataataataaagcatcgaga 30040773  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| | ||||||||||| ||||||||||| |||||  ||||||||||||    
T  30040772 ctattatgtatatagactgatgaccacatctcatgggtcatagatatgagatatt 30040718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 11420924 - 11421074
Alignment:
Q  79 ttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 177  Q
    ||||| || |||||||||||||||||| ||| |||||||||||  ||||  ||||||||||||||||| |||| ||||||||  ||| | |   ||||||    
T  11420924 ttaatcattagattacattaacataaagaacgctattcttaaatgtatccgtagtcaaactttaatatgaattaggataataataaagcttcgagactat 11421023  T
Q  178 tatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||| ||||||||||||| ||||||||||| |||||  ||||||||||||    
T  11421024 tatgtatgtagactgatgaccacatctcatgagtcatagatatgagatatt 11421074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 19365423 - 19365577
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||||| |||| ||| |||||||||||  ||||  ||||||| ||||||||||||||||| |||||  |||  ||   ||    
T  19365423 tgacttaatcatgagattacattaacgtaaagaacgctattcttaaatgtatccgtagtcaagctttaatataaattggggtaataataaagtgttgaga 19365522  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||| |  |||||||||||| ||||||||||| ||||||| |||||||||||    
T  19365523 ctattatatacgtagactgatgaccacatctcatgggtcatgagtatgagatatt 19365577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 9537881 - 9538017
Alignment:
Q  91 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtaga 189  Q
    ||||||||||||||| ||| |||||||||||  ||| | |||||||  |||||||||| ||||||||| |  |||||| || ||||||||||| || |      
T  9537881 ttacattaacataaagaacgctattcttaaatgtatatgtagtcaatatttaatataatttgggataacaataaaacgcatagactattatgtatgcat- 9537979  T
Q  190 ctgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
     |||||| ||||||||||| |||||| ||||||||||||    
T  9537980 -tgatgaccacatctcatgagtcatggatatgagatatt 9538017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 5528864 - 5528723
Alignment:
Q  88 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgt 186  Q
    |||||||||||||| ||| |||  ||||||||||| | |  |||||||| ||||||  |||||   |||||||  ||| ||||| ||||||||||| |||    
T  5528864 agattacattaacacaaagaactatattcttaaaagtgttcatagtcaagctttaaattaaatcatgataataataaagcgtatagactattatgtttgt 5528765  T
Q  187 agactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||| | |||| ||||||||| | |||||||||| ||||||||    
T  5528764 agaattatgaccacatctcacgggtcatgaatacgagatatt 5528723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 32636446 - 32636542
Alignment:
Q  131 gtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||| ||||||||||||| || ||||||  ||| |||   ||||||||||| ||||||||||||| | ||||||||| |||||||||| ||||||||    
T  32636446 gtcaatctttaatataaatagg-ataataataaagcgtggagactattatgtatgtagactgatgaccgcatctcatgggtcatgaatacgagatatt 32636542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 18163164 - 18163220
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||||| ||||||||| |||||  ||||||||||||    
T  18163164 gactattatgtatgtagactgatgatcgcatctcatgggtcatagatatgagatatt 18163220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 5870320 - 5870475
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| | || | ||| |||||||||||  ||||| |||||||| ||||||||| |||   ||||||||  ||| |||       
T  5870320 tgacttaatcatgagattacattatcttatagaacgctattcttaaatgtatctgtagtcaaagctttaatatgaataaaggataataataaagcgtcaa 5870419  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  5870420 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 5870475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 17300359 - 17300204
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| | || | ||| |||||||||||  |||| ||||||||| ||||||||| |||   ||||||||  ||| |||       
T  17300359 tgacttaatcatgagattacattatcttatagaacgctattcttaaatgtatccatagtcaaagctttaatatgaataaaggataataataaagcgtcga 17300260  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  17300259 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 17300204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 34975453 - 34975608
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaacttt-aatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||| | |||||||| ||| ||||| |||   ||||||||  ||| |||       
T  34975453 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatttgtagtcaaagttttaatatgaataaaggataataataaagcgtcga 34975552  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  34975553 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 34975608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 1941628 - 1941782
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||| || |||||| |||  ||||||||||  |||   ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  1941628 tgacttaatcatgagattacagtatcataaagaacgttattcttaaatgtattcgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 1941727  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| | ||||||||||| | ||||||||| || ||  ||||||||||||    
T  1941728 ctattatgtatatagactgatgaccgcatctcatgggttatagatatgagatatt 1941782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 5616397 - 5616450
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagat 225  Q
    ||||||||||| |||||| |||||| ||||||||||| ||||| ||||||||||    
T  5616397 gactattatgtatgtagattgatgaccacatctcatgggtcataaatatgagat 5616450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 4676283 - 4676227
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  4676283 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 4676227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 19362412 - 19362468
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| |||||| ||||||   ||||||||| |||||||||||||||||||    
T  19362412 gactattatgtatgtagattgatgactgcatctcatgggtcatgaatatgagatatt 19362468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 20243939 - 20243995
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  20243939 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 20243995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 2677015 - 2677070
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  2677015 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 2677070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 3369323 - 3369268
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  3369323 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 3369268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 15461499 - 15461554
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  15461499 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 15461554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 15815023 - 15815078
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  15815023 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 15815078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 18111343 - 18111288
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  18111343 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 18111288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 26531615 - 26531670
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  26531615 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 26531670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 4426629 - 4426595
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  4426629 gactattatgtgggtagactgatgatcacatctca 4426595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 9487455 - 9487609
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||| ||| |||||| |||  ||||||||||  ||||  |||||||  |||||||| |||| ||||||||  ||| |||   ||    
T  9487455 tgacttaatcatgagattactttatcataaagaacgttattcttaaatgtatccgtagtcaagatttaatatgaattaggataataataaagcgttgaga 9487554  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||| ||||||| | | ||||||||| || ||  ||||||||||||    
T  9487555 ctattatgtatgttgactgataaacgcatctcatgggttatagatatgagatatt 9487609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 10677580 - 10677546
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  10677580 gactattatgtgggtagactgatgatcacatctca 10677546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 10891220 - 10891186
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  10891220 gactattatgtgggtagactgatgatcacatctca 10891186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 28393159 - 28393125
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  28393159 gactattatgtgggtagactgatgatcacatctca 28393125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 4546021 - 4546138
Alignment:
Q  111 tattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcg 210  Q
    ||||||||||  ||||  |||| || ||||||||| |||| ||||||||  ||| |||   ||||||||||| ||| ||||||| ||| ||||||||| |    
T  4546021 tattcttaaatgtatccgtagttaagctttaatatgaattaggataataataaagcgtcgagactattatgtatgttgactgataatcgcatctcatggg 4546120  T
Q  211 tcatgaatatgagatatt 228  Q
    | ||  ||||||||||||    
T  4546121 ttatagatatgagatatt 4546138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 228
Target Start/End: Complemental strand, 13343 - 13193
Alignment:
Q  79 ttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactat 177  Q
    ||||| || |||||||||||||||||||| || ||||||||||  |||| |||||||| ||||||||| |||||||||||||  ||| |||   ||||||    
T  13343 ttaatcatgagattacattaacataaaaaacagtattcttaaatgtatccatagtcaagctttaatattaattgggataataataaagcgtcgagactat 13244  T
Q  178 tatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||| ||||||| ||||| ||||||||||| |||||  ||||||||||||    
T  13243 tatgtatgtagaccgatgaccacatctcatgggtcatatatatgagatatt 13193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 4073480 - 4073634
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||||   ||| |||| ||||||||||| ||||  |||||||||||||||||||||  ||||||||  ||||||||  ||    
T  4073480 tgacttaatcatgagattacattaatggaaagaacattattcttaaaagtatccgtagtcaaactttaatataaatcaggataataataaaacgtagaga 4073579  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| |||||| ||| ||||||||| |||  |||||||||||||||||||    
T  4073580 ctattatgtttgtagattgaggatcacatcccataggtcatgaatatgagatatt 4073634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 20736726 - 20736572
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||  || ||||||||||  ||| |||   ||    
T  20736726 tgacttaatcatgagattacattaacataaagaacattattcttaaatgtatctgtagtcaagctttaataagaactgggataataataaagcgtcgaga 20736627  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||| ||||||||||| || ||  ||||||||||||    
T  20736626 ctattatgtatgtagactgatgaccacatctcatgtgttatagatatgagatatt 20736572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 8612820 - 8612973
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  ||||||| ||||||||||| || ||||||||  ||| |||   ||    
T  8612820 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaagctttaatataa-ttaggataataataaagcgtcgaga 8612918  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||| | ||||||||| || ||  ||||||||||||    
T  8612919 ctattatgtatgtagactgatgaccgcatctcatgggttatagatatgagatatt 8612973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 22560533 - 22560428
Alignment:
Q  123 tatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatga 222  Q
    |||| |||||||| |||||||||||||||||||||||  ||| || |  ||||||||||  ||||||| ||||| ||||||||||| |||||| ||||||    
T  22560533 tatccatagtcaagctttaatataaattgggataataataaagcgcagagactattatgcatgtagaccgatgaccacatctcatgggtcatggatatga 22560434  T
Q  223 gatatt 228  Q
    ||||||    
T  22560433 gatatt 22560428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 21994492 - 21994619
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||||||| ||||| |||||||||||||||  |||| |||||| | |||||||||||||||| ||||||  ||| || |  ||    
T  21994492 tgacttaatcatgagattacattaatataaagaacactattcttaaatgtatccatagtcgagctttaatataaattggaataataataaagcgcaaaga 21994591  T
Q  174 ctattatgtgtgtagactgatgatcaca 201  Q
    ||||||| | ||||||||||||| ||||    
T  21994592 ctattatatatgtagactgatgaccaca 21994619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 23846767 - 23846700
Alignment:
Q  93 acattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata 159  Q
    ||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  23846767 acatttacataaagaacactattcttaaaagtatctgtagtcaaactttaatataaattgggataata 23846700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 19218389 - 19218487
Alignment:
Q  129 tagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||| ||||||||||||  |||||||||  |||  |||  ||||||||||| ||||||||||||| |||| |||||| |||||||||||||||||||    
T  19218389 tagtcaagctttaatataaag-gggataataataaagtgtagagactattatgtatgtagactgatgaccacacctcatgggtcatgaatatgagatatt 19218487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 10359384 - 10359294
Alignment:
Q  137 ctttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||||||| |||||||  ||| ||||  ||||||||| | |||||| |||||| ||||||||||| ||||||||| |||||||||    
T  10359384 ctttaatataaattgagataataataaagcgtagagactattatatatgtagagtgatgaccacatctcatg-gtcatgaatgtgagatatt 10359294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 1586508 - 1586352
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| | || | |||||||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||       
T  1586508 tgacttaatcatgagattacattatcttatagaacactattcttaaatgtatccgtagtcaaagctttaatatgaataaaggataataataaagcgtcga 1586409  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  1586408 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 1586352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 14074382 - 14074538
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattggg-ataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| |||||| ||||||| |||||||  ||| | |||||||| ||||||||| |||   | ||||||  ||| |||       
T  14074382 tgacttaatcatgagattacattatcataaagaacactagtcttaaatgtatatgtagtcaaagctttaatatgaataaagtataataataaagcgtcga 14074481  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  14074482 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 14074538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 13995243 - 13995188
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  13995243 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 13995188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 16789073 - 16789128
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  16789073 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 16789128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 18020141 - 18020086
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  18020141 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 18020086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 22860188 - 22860133
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  22860188 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 22860133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 189002 - 188968
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  189002 gactattatgtgggtagactgatgatcacatctca 188968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 5758878 - 5758725
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||| |||| |||||  ||||  |||| || ||||||||||| || ||||||||  ||| |||   ||    
T  5758878 tgacttaatcatgagattacattatcataaagaacaatattattaaatgtatccgtagtaaagctttaatataa-ttaggataataataaagcgtcgaga 5758780  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
     |||||||| |||||||||||||   ||||||||| || ||  ||||||||||||    
T  5758779 atattatgtatgtagactgatgactgcatctcatgggttatagatatgagatatt 5758725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 11651905 - 11651939
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  11651905 gactattatgtgggtagactgatgatcacatctca 11651939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 40386 - 40232
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||| ||||||||| |||| ||| |||||||||||  |||| |||||||| ||||||||||||||| |||||||  ||| ||    ||    
T  40386 tgacttaatcatgagaatacattaacgtaaagaacgctattcttaaatgtatccatagtcaagctttaatataaattgagataataataaagcgccgaga 40287  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||  ||||||||||| |||||| ||||||||||||    
T  40286 ctattatgtatgtagactgatggccacatctcatgggtcatggatatgagatatt 40232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 20539798 - 20539641
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataata-taaaaa--cgtat 170  Q
    ||||||||| ||  ||||||||||||||||| |||  |||||||||| | || | |||| || ||||||| ||||||||||||||| ||| ||  || ||    
T  20539798 tgacttaatcatgtgattacattaacataaagaacgttattcttaaatacatttgtagtaaagctttaatgtaaattgggataataataataaagcgcat 20539699  T
Q  171 tgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
     ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  20539698 agacgattatgtatgtagactgatgatcacatctcatgggtcatgaatatgagatatt 20539641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 18835254 - 18835408
Alignment:
Q  75 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||||||||||||||| |  |||||||||| |||||| ||||| | |||||||||  ||||  ||||||  ||| | |   ||    
T  18835254 tgacttaatcatgagattacattaacataaaaaacgttattcttaaatatatctgtagtccagctttaatatggattgaaataataataaagcatcgaga 18835353  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||| | ||||||||||| |||||  ||||||||||||    
T  18835354 ctattatgtatgtagactgattaccacatctcatgggtcatagatatgagatatt 18835408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 2963332 - 2963180
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  |||   | ||||||||||||||||| || ||||||||  ||| ||||  ||    
T  2963332 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtattcgt-gtcaaactttaatataa-ttaggataataataaagcgtagaga 2963235  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| |||||||| |||| |  |||||||| || || |||||||||||||    
T  2963234 ctattatgtatgtagactaatgaccgtatctcatgggttataaatatgagatatt 2963180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 22659894 - 22659738
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||       
T  22659894 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatccgtagtcaaagctttaatatgaataaaggataataataaagcgtcaa 22659795  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| |||||||||||||   ||||||||| |||||  ||||||||||||    
T  22659794 gactattatgtatgtagactgatgactgcatctcatgggtcatagatatgagatatt 22659738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 8371653 - 8371498
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| | |||| |||||||||||||||  | ||| |||||||| ||||||||| |||   ||||||||  ||| | |       
T  8371653 tgacttaatcatgagattacattatcttaaataacactattcttaaatgtgtctgtagtcaaagctttaatatgaataaaggataataataaagcatcga 8371554  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  8371553 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 8371498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 45534573 - 45534517
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  45534573 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 45534517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 12562125 - 12562180
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  12562125 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 12562180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 21916678 - 21916733
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  21916678 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 21916733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 22130909 - 22130854
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  22130909 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 22130854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 27007817 - 27007762
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  27007817 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 27007762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 27014960 - 27014905
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  27014960 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 27014905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 27880787 - 27880732
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  27880787 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 27880732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 28020968 - 28020913
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  28020968 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 28020913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 28498495 - 28498550
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  28498495 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 28498550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 24642831 - 24642865
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  24642831 gactattatgtgggtagactgatgatcacatctca 24642865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 26240486 - 26240542
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| || |||||||||| | ||||||||| |||||  ||||||||||||    
T  26240486 gactattatgtatgaagactgatgaccgcatctcatgggtcatagatatgagatatt 26240542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 3587813 - 3587967
Alignment:
Q  75 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||| |||||||||||| |  ||||||||||   |||||||||||| |||||||||||||||||||||||  ||| ||||  ||    
T  3587813 tgacttaatcatgagattactttaacataaaaaacgttattcttaaatgaatctatagtcaagctttaatataaattgggataataataaagcgtagaga 3587912  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| | ||||| ||||| || |||| ||  |||||||||||||||||||    
T  3587913 ctattatgtatatagaccgatgaccagatctaataagtcatgaatatgagatatt 3587967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 19393822 - 19393668
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||||||||||||| ||  |||||||||||  ||||| ||||||| ||||||||| | ||||||||||   ||| |||   ||    
T  19393822 tgacttaatcatgagattacattaacataaagaatgctattcttaaatgtatctgtagtcaagctttaatatgagttgggataattataaagcgtcgaga 19393723  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| |||||||| |||| ||||| ||||| ||||| |||||||||||||    
T  19393722 ctattatgtatgtagactaatgaccacatttcatgggtcataaatatgagatatt 19393668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 28130465 - 28130619
Alignment:
Q  75 tgacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||||| | |||||||||||  ||||| ||||||| ||||||||| |||  ||||||||  ||| |||   ||    
T  28130465 tgacttaatcatgagattacattatcataaaaaacgctattcttaaatgtatctgtagtcaagctttaatatgaataaggataataataaagcgtcgaga 28130564  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||  ||||||||||||| | ||||||||| ||||| |||||||||||||    
T  28130565 ctattatgcatgtagactgatgaccgcatctcatgggtcataaatatgagatatt 28130619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 24443724 - 24443571
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| |  |||||||||||||||||| |||  ||||||||||  ||||  ||| ||| ||||||||||||| ||||| |||  |||  |||  ||    
T  24443724 tgacttaatcacgagattacattaacataaagaacgatattcttaaatgtatccgtagccaagctttaatataaat-gggatgataacaaagtgtaaaga 24443626  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||    
T  24443625 ctattatgtatgtagactgatgaccacatctcatgggtcatgaatataagatatt 24443571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 19388469 - 19388610
Alignment:
Q  88 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgt 186  Q
    ||||||||| || ||||| ||||||||| |||| | ||||| ||||||| ||| ||||||||||||||||||| |||| | ||  || |||||||| | |    
T  19388469 agattacatcaatataaagaacactatttttaatagtatctgtagtcaagcttaaatataaattgggataataaaaaagcatagagattattatgtatat 19388568  T
Q  187 agactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||| |||||| || |||||| | |||||||||||||||||||    
T  19388569 agattgatgaccatatctcacgggtcatgaatatgagatatt 19388610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 15170428 - 15170280
Alignment:
Q  76 gacttaattataagattacattaacataaaaa-cactattcttaaaaatatctatagtcaaactttaatata--aattgggataatataaaaacgtattg 172  Q
    |||||||| || |||||||||||||||||||| |  |||||||||| |||| | ||||||| ||||||||||  |||||||||||||  ||| ||||  |    
T  15170428 gacttaatcatgagattacattaacataaaaaacgttattcttaaatatatttgtagtcaagctttaatatataaattgggataataataaagcgtagag 15170329  T
Q  173 actattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatg 221  Q
    |||||||| | ||||||||||| | ||||||| ||  |||||| |||||    
T  15170328 actattatatatgtagactgatcaccacatcttataggtcatggatatg 15170280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 2935935 - 2936089
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||||||||||||| |||  ||||||||||  ||||  ||||||| ||||||||| ||||| |||||||  ||| | |   ||    
T  2935935 tgacttaatcatgagattacattaacataaagaacgttattcttaaatgtatccgtagtcaagctttaatatgaattgcgataataataaagcatcgaga 2936034  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    || |||| | |||||||||||||  |||||||||| |||||  ||||||||||||    
T  2936035 ctgttatttatgtagactgatgactacatctcatgggtcatagatatgagatatt 2936089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 15999886 - 16000040
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| | |||| ||| ||||| |||||  ||||  ||||||||||||||||| |||| ||||||||  ||| |||   ||    
T  15999886 tgacttaatcatgagattacattaccttaaagaacgctattattaaatgtatccttagtcaaactttaatatgaattaggataataataaagcgtcgaga 15999985  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    || |||||| || |||||||||| ||||| ||||| |||||  ||||||||||||    
T  15999986 cttttatgtatgcagactgatgaccacatatcatgggtcatagatatgagatatt 16000040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 18259522 - 18259368
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||| ||||||||||  |||| |||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  18259522 tgacttaatcatgagattacattatcataaagaacattattcttaaatgtatccatagtcaagctttaatatgaattaggataataataaatcgtcgaga 18259423  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
     |||||||| ||| ||||||| | | ||||||||| || ||  ||||||||||||    
T  18259422 gtattatgtatgttgactgataaccgcatctcatgggttatagatatgagatatt 18259368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 47167257 - 47167103
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    |||||| || || ||||||||||| |||||| |||  ||||||||||  ||| | ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  47167257 tgactttatcatgagattacattatcataaagaacgttattcttaaatgtatttgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 47167158  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||||| | ||||||||| || ||  ||||||||||||    
T  47167157 ctattatgtatgtagactgatgaccgcatctcatgggttatagatatgagatatt 47167103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 25846255 - 25846139
Alignment:
Q  112 attcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcgt 211  Q
    |||||||||| ||| | || |||| ||||||||||| |  ||||||||  ||| ||||  ||||||||||  ||||||||||||| ||||||||||   |    
T  25846255 attcttaaaagtatatgtattcaagctttaatataagtccggataataataaatcgtagagactattatgcatgtagactgatgaccacatctcattgct 25846156  T
Q  212 catgaatatgagatatt 228  Q
    |||||||||||||||||    
T  25846155 catgaatatgagatatt 25846139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 14586070 - 14586224
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| | |||  ||| ||||| |||||  ||||  ||||||||||||||||| |||||| ||||||  ||| |||   ||    
T  14586070 tgacttaatcatgagattacattatcttaatgaacgctattattaaatgtatccttagtcaaactttaatatgaattggaataataataaagcgtcgaga 14586169  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    || |||||| || |||||||||| ||||| ||||| |||||  ||||||||||||    
T  14586170 cttttatgtatgcagactgatgaccacatatcatgggtcatagatatgagatatt 14586224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 31190825 - 31190688
Alignment:
Q  91 ttacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtaga 189  Q
    ||||||||||||||| |||| |||| ||||| |||||  ||||||| ||||| |||||||||||||||||  ||| |     |||||||| || |||||     
T  31190825 ttacattaacataaataacattattattaaatatatccttagtcaagctttagtataaattgggataataataaagcaccgagactattacgtatgtagg 31190726  T
Q  190 ctgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    |||| ||  |||||||||| |||||| |||||||||||    
T  31190725 ctgacgactacatctcatgggtcatggatatgagatat 31190688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 15729653 - 15729809
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| | || | |||||||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||       
T  15729653 tgacttaatcatgagattacattatcttatagaacactattcttaaatgtatccgtagtcaaagctttaatatgaataaaggataataataaagcgtcga 15729752  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  15729753 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 15729809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 25845816 - 25845720
Alignment:
Q  132 tcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    |||| ||||||||||| |  ||||||||  ||| ||||  ||||||||||  ||||||||||||| ||||||||||   ||||||||||||||||||    
T  25845816 tcaagctttaatataagtccggataataataaatcgtagagactattatgcatgtagactgatgaccacatctcattgctcatgaatatgagatatt 25845720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 227
Target Start/End: Original strand, 19230792 - 19230945
Alignment:
Q  77 acttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtattga 173  Q
    ||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  |||||||| | ||||||| |||   ||||||||  ||| |||   ||    
T  19230792 acttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaaaacattaatatgaataaaggataataataaagcgtcgaga 19230891  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  19230892 ctattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 19230945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 5983072 - 5982956
Alignment:
Q  111 tattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcg 210  Q
    ||||||||||| ||  | |||||||  ||||||||||||||||||| ||  |||  || | ||||||||||| |||||| |||||||||| | ||| | |    
T  5983072 tattcttaaaagtagttgtagtcaagatttaatataaattgggatagtaataaagtgtgtagactattatgtatgtagattgatgatcacgtgtcacggg 5982973  T
Q  211 tcatgaatatgagatat 227  Q
    ||||  |||||||||||    
T  5982972 tcatatatatgagatat 5982956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 10669202 - 10669146
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  10669202 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 10669146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 41681273 - 41681217
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  41681273 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 41681217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 2204554 - 2204609
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  2204554 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 2204609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 8465001 - 8465056
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  8465001 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 8465056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 18139638 - 18139583
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  18139638 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 18139583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 18400106 - 18400161
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  18400106 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 18400161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 18407090 - 18407145
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  18407090 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 18407145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 19859124 - 19859179
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  19859124 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 19859179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 30254140 - 30254195
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  30254140 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 30254195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 48808796 - 48808741
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  48808796 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 48808741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 18561189 - 18561223
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  18561189 gactattatgtgggtagactgatgatcacatctca 18561223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 34128478 - 34128631
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||| |||| |||||  ||||  |||| || ||||||||||| || ||||||||  ||| |||   ||    
T  34128478 tgacttaatcatgagattacattatcataaagaacattatttttaaatgtatccgtagttaagctttaatataa-ttaggataataataaagcgtcgaga 34128576  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
     |||||||| |||||||||||||   ||||||||| || ||  ||||||||||||    
T  34128577 ttattatgtatgtagactgatgactgcatctcatgggttatagatatgagatatt 34128631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 228
Target Start/End: Original strand, 8636 - 8789
Alignment:
Q  76 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 174  Q
    |||||||| || |||||||||||||||||| |||||||||||||||| ||| | |||||||  |||||||||||||| |||| ||  ||| ||||  |||    
T  8636 gacttaatcatgagattacattaacataaagaacactattcttaaaagtatttgtagtcaagttttaatataaattgagatagtaataaagcgtagagac 8735  T
Q  175 tattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    || ||||| |||||| |||||||||| |||||   |||||  ||||||||||||    
T  8736 taatatgtatgtagattgatgatcacgtctcacatgtcatagatatgagatatt 8789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 83412 - 83259
Alignment:
Q  76 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgac 174  Q
    ||||||||| | |||||| ||| ||| ||| || ||||||||||||| ||||  ||||| || |||||||||||||| |||||||  |||  |||| |||    
T  83412 gacttaattgtgagattaaattcacacaaagaatactattcttaaaagtatccgtagtcgaaatttaatataaattgagataataataaagtgtatagac 83313  T
Q  175 tattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    |||||||| ||||||||||||| ||| ||||||| ||||| ||||||| |||||    
T  83312 tattatgtatgtagactgatgaccacgtctcatgggtcataaatatgaaatatt 83259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 15526658 - 15526811
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||   || | ||||||| |||||||||||| || |||||||  ||| ||||  ||    
T  15526658 tgacttaatcatgagattacattaacataaagaacactattcttaaatgcatatgtagtcaagctttaatataaa-tgagataataataaagcgtagaga 15526756  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||||||||||| | | |||||  |  |||||||||||||||||||    
T  15526757 ctattatgtttgtagactgataaccgcatctggtaggtcatgaatatgagatatt 15526811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 14146974 - 14147079
Alignment:
Q  123 tatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatga 222  Q
    ||||| ||||||| |||||| ||||||||||||||||  ||| |  |  ||||||||| | ||||||||||||| ||||||||||| |||||| ||||||    
T  14146974 tatctgtagtcaagctttaacataaattgggataataataaagcacagagactattatatatgtagactgatgaccacatctcatgggtcatggatatga 14147073  T
Q  223 gatatt 228  Q
    ||||||    
T  14147074 gatatt 14147079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 25979126 - 25978972
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  25979126 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 25979027  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||| ||||||| | | ||||||||| || ||  ||||||||||||    
T  25979026 ctattatgtatgttgactgataaccgcatctcatgggttatagatatgagatatt 25978972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 11787491 - 11787645
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||  ||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  11787491 tgacttaatcatgagattacattatcataaagaacgttattcttaaatgtatctgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 11787590  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| ||| ||||||| | | ||||||||  || ||  ||||||||||||    
T  11787591 ctattatgtatgttgactgataaccgcatctcattggttatagatatgagatatt 11787645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 55426922 - 55427079
Alignment:
Q  74 atgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtat 170  Q
    |||||||||| || ||||||||||| | || | ||| |||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||      
T  55426922 atgacttaatcatgagattacattatcttatagaacgctattcttaaatgtatccgtagtcaaagctttaatatgaataaaggataataataaagcgtcg 55427021  T
Q  171 tgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
     ||||||||||| ||||||||||||| | ||||||||| |||||  ||||||||||||    
T  55427022 agactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatatt 55427079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 12299913 - 12299968
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  12299913 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 12299968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 14890393 - 14890448
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  14890393 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 14890448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 15846836 - 15846781
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  15846836 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 15846781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 20147854 - 20147799
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  20147854 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 20147799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 21034240 - 21034295
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  21034240 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 21034295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 13516993 - 13517027
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  13516993 gactattatgtgggtagactgatgatcacatctca 13517027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 17200209 - 17200175
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  17200209 gactattatgtgggtagactgatgatcacatctca 17200175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 28088120 - 28088192
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatat 145  Q
    ||||||||| || ||||||||||| |||||| ||||||||||||||| | |||  |||||||| |||||||||    
T  28088120 tgacttaatcatgagattacattatcataaagaacactattcttaaatagatccgtagtcaaagctttaatat 28088192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 11927 - 11774
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| |||||||||||||||  ||||| ||||||| ||||||||| |||| ||||||||  ||| |||    |    
T  11927 tgacttaatcatgagattacattatcataaagaacactattcttaaatgtatctgtagtcaatctttaatat-aattaggataataataaagcgtcgaaa 11829  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| |||||| |||||| | ||||||||| || ||  ||||||||||||    
T  11828 ctattatgtatgtagattgatgaccgcatctcatgggttatagatatgagatatt 11774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 228
Target Start/End: Original strand, 8727568 - 8727725
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataat-ata--aaaacgtat 170  Q
    ||||| ||| |||||||||| |||||||||| |||  |||||| |||  ||||| ||||||||||||||||| ||||| |||||| |||  ||| |||      
T  8727568 tgactaaatcataagattactttaacataaagaacgttattctgaaatctatctgtagtcaaactttaatatgaattgagataataataataaagcgtcg 8727667  T
Q  171 tgactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
     ||||||||| | |||||||||||||  |||||||||| |||||  ||||||||||||    
T  8727668 agactattatctatgtagactgatgactacatctcatgggtcatatatatgagatatt 8727725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 633840 - 633992
Alignment:
Q  77 acttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgact 175  Q
    ||||||| || |||||| |||| |||||| |||| |||| |||||  ||||  ||||||| ||||||||| |||  ||||||||  ||| |||   ||||    
T  633840 acttaatcatgagattaaattatcataaagaacattatttttaaatgtatccgtagtcaagctttaatatgaataaggataataacaaagcgtcgagact 633939  T
Q  176 attatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||| ||||||||||||| | ||||||||| |||||   |||||||||||    
T  633940 attatgtatgtagactgatgaccgcatctcatgggtcatagctatgagatatt 633992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 19706839 - 19706684
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| | |||| ||| |||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||       
T  19706839 tgacttaatcatgagattacattatcttaaagaacgctattcttaaatgtatccgtagtcaaagctttaatatgaataaaggataataataaagcgtcga 19706740  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  19706739 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 19706684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 228
Target Start/End: Original strand, 35930485 - 35930640
Alignment:
Q  76 gacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtattg 172  Q
    |||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  |||||||| ||||||||| |||   ||||||||  ||| |||   |    
T  35930485 gacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaaaactttaatatgaataaaggataataataaagcgtcgag 35930584  T
Q  173 actattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    |||||||||| | ||||||||||| | ||||||||| |||||  ||||||||||||    
T  35930585 actattatgtatatagactgatgaccgcatctcatgggtcatagatatgagatatt 35930640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 29096628 - 29096778
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    |||||||||  |||||||||||||||| ||| |||  ||||||||||| ||| | ||||||| |||| ||||| || | |||||||  ||| ||||  ||    
T  29096628 tgacttaatcgtaagattacattaacaaaaagaactttattcttaaaagtatatgtagtcaagcttt-atatatatcgagataataataaagcgtagaga 29096726  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagata 226  Q
    ||||||||| ||| ||||  ||| ||| | ||||| |||||||||||||||||    
T  29096727 ctattatgtatgt-gacttgtgaccacttatcatgggtcatgaatatgagata 29096778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 9456118 - 9456173
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  9456118 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 9456173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 20391539 - 20391484
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  20391539 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 20391484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 20779945 - 20779890
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  20779945 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 20779890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 22670557 - 22670502
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  22670557 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 22670502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 42817289 - 42817234
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  42817289 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 42817234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 43802665 - 43802610
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  43802665 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 43802610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 47667774 - 47667719
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  47667774 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 47667719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 16359060 - 16359026
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  16359060 gactattatgtgggtagactgatgatcacatctca 16359026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 26923678 - 26923628
Alignment:
Q  178 tatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||| ||||||||||||| ||||||||||| |||||  ||||||||||||    
T  26923678 tatgtatgtagactgatgaccacatctcatgggtcatagatatgagatatt 26923628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 27310602 - 27310568
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  27310602 gactattatgtgggtagactgatgatcacatctca 27310568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 3856017 - 3855910
Alignment:
Q  98 aacataaaaacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgtagactgatgat 197  Q
    |||||||  ||| ||||||||||| ||| | ||||||||||||| | | || ||||||| ||| ||| | |   |||||||| ||| |||||||||||||    
T  3856017 aacataaggacattattcttaaaa-tatttgtagtcaaactttattgtgaagtgggatattattaaagcatggagactattacgtgggtagactgatgat 3855919  T
Q  198 cacatctca 206  Q
    |||||||||    
T  3855918 cacatctca 3855910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 53682 - 53823
Alignment:
Q  88 agattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattgactattatgtgtgt 186  Q
    |||||||||||||||||| |||||||||||||||  ||||  || |||| ||||||||| |||| ||||||||  |||  ||   ||||||||||| |||    
T  53682 agattacattaacataaagaacactattcttaaatgtatccgtattcaagctttaatatgaattaggataataataaagtgtcaagactattatgtatgt 53781  T
Q  187 agactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||| |||||| | ||||||||| |||||  ||||||| ||||    
T  53782 agattgatgaccgcatctcatgggtcatagatatgaggtatt 53823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 45346 - 45212
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || ||||||||||| |||||| ||| |||||||||||  ||||  ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  45346 tgacttaatcatgagattacattatcataaagaacgctattcttaaatgtatccgtagtcaagctttaatattaattaggataataataaagcgtcgaga 45247  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatg 208  Q
    ||||||||| ||| ||||||| | | |||||||||    
T  45246 ctattatgtatgttgactgataaacgcatctcatg 45212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 5711 - 5745
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctca 206  Q
    |||||||||||| ||||||||||||||||||||||    
T  5711 gactattatgtgggtagactgatgatcacatctca 5745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 8207 - 8362
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaa-ctttaatataaattg-ggataatataaaaacgtatt 171  Q
    ||||||||| || ||||||||||| | || | ||| |||||||||||  |||| ||||||||| ||||||||| |||   ||||||||  ||| |||       
T  8207 tgacttaatcatgagattacattatcttatagaacgctattcttaaatgtatccatagtcaaagctttaatatgaataaaggataataataaagcgtcga 8306  T
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  8307 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 8362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 67772 - 67618
Alignment:
Q  75 tgacttaattataagattacattaacataaa-aacactattcttaaaaatatctatagtcaaactttaatataaattgggataatataaaaacgtattga 173  Q
    ||||||||| || |||||||| || |||||| |||  ||||||||||  |||   ||||||| ||||||||| |||| ||||||||  ||| |||   ||    
T  67772 tgacttaatcatgagattacagtatcataaagaacgttattcttaaatgtattcgtagtcaagctttaatatgaattaggataataataaagcgtcgaga 67673  T
Q  174 ctattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatatt 228  Q
    ||||||||| | ||||||||||| | ||||||||| || ||  ||||||||||||    
T  67672 ctattatgtatatagactgatgaccgcatctcatgggttatagatatgagatatt 67618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 3975 - 3920
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  3975 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 3920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 185 - 240
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||| ||||||||| ||||||||||| |||||  |||||||||||    
T  185 gactattatgtatgtcgactgatgaccacatctcatgggtcatagatatgagatat 240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 130524 - 130469
Alignment:
Q  172 gactattatgtgtgtagactgatgatcacatctcatgcgtcatgaatatgagatat 227  Q
    ||||||||||| ||||||||||||| | ||||||||| |||||  |||||||||||    
T  130524 gactattatgtatgtagactgatgaccgcatctcatgggtcatagatatgagatat 130469  T

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