View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348_low_87 (Length: 253)

Name: NF1348_low_87
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348_low_87
NF1348_low_87
[»] chr7 (7 HSPs)
chr7 (1-164)||(22534198-22534361)
chr7 (1-164)||(22525505-22525668)
chr7 (43-89)||(7327775-7327821)
chr7 (43-94)||(20456102-20456153)
chr7 (106-161)||(24391071-24391126)
chr7 (124-158)||(20414584-20414618)
chr7 (125-163)||(46769050-46769088)
[»] scaffold0128 (3 HSPs)
scaffold0128 (40-161)||(8199-8320)
scaffold0128 (43-144)||(25251-25352)
scaffold0128 (40-81)||(3740-3781)
[»] chr5 (1 HSPs)
chr5 (109-161)||(42297807-42297859)
[»] chr4 (2 HSPs)
chr4 (43-89)||(2910627-2910673)
chr4 (43-83)||(11982095-11982135)
[»] chr1 (1 HSPs)
chr1 (106-158)||(39379425-39379477)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 22534198 - 22534361
Alignment:
Q  1 agaactgatttcagttgggatgattgggaatttcatccattcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaag 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22534198 agaactgatttcagttgggatgattgggaatttcatccgttcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaag 22534297  T
Q  101 gtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctga 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22534298 gtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctga 22534361  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 22525668 - 22525505
Alignment:
Q  1 agaactgatttcagttgggatgattgggaatttcatccattcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaag 100  Q
    ||||||||||||  ||  |||||||| |||||| ||   || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |    
T  22525668 agaactgatttcgattatgatgattgcgaattttatgagtttgtgtttggttatgataattcaaccgacacctataaagttgtagccttaaattcaggcg 22525569  T
Q  101 gtaatgatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcctga 164  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||    
T  22525568 gtaatgatgtgagagtcattaccatgggtgataatgtttggagaactattaaaacttttcctga 22525505  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 7327775 - 7327821
Alignment:
Q  43 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 89  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||||    
T  7327775 gtgttttgttatgataattcaaccaacacttataaggttgtagcctt 7327821  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 20456102 - 20456153
Alignment:
Q  43 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaatt 94  Q
    |||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  20456102 gtgttttgttttgataattcaaccgacacatataaggttgtggccttgaatt 20456153  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 24391071 - 24391126
Alignment:
Q  106 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 161  Q
    ||||||||||| ||||  |||||||||||| ||||||||| |||| ||||||||||    
T  24391071 gatgtgagagtttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 20414584 - 20414618
Alignment:
Q  124 ttgggtgataatgtttggagaactattaaaagttt 158  Q
    |||||||||||||||||||||| ||||||||||||    
T  20414584 ttgggtgataatgtttggagaagtattaaaagttt 20414618  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 46769050 - 46769088
Alignment:
Q  125 tgggtgataatgtttggagaactattaaaagttttcctg 163  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  46769050 tgggtgataatatttggagaactattcaaagttttcctg 46769088  T

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Target: scaffold0128 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 8199 - 8320
Alignment:
Q  40 ttcgtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgttt 139  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||| ||||||| ||||   ||||| ||  ||||||||||||  ||||||||||||||||    
T  8199 ttcgtgtttggttatgatagttcaaccgacacttataaagttgtggccttaagttcaactggtaacgaaatgagagtctttagtttgggtgataatgttt 8298  T
Q  140 ggagaactattaaaagttttcc 161  Q
    |||||  |||| |||| |||||    
T  8299 ggagatatattcaaagatttcc 8320  T

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Target: scaffold0128; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 25251 - 25352
Alignment:
Q  43 gtgtttggttatgataattcaaccgacacctataaggttgtagccttaaattcagaaggtaatgatgtgagagtctttaccttgggtgataatgtttgga 142  Q
    |||||||||||||| | || ||| ||||| |||||||||||  | |||| ||||   ||||| || |||| ||||||||  |||||||||||||||||||    
T  25251 gtgtttggttatgagagtttaactgacacttataaggttgtgtcattaagttcaactggtaacgaagtgaaagtctttagtttgggtgataatgtttgga 25350  T
Q  143 ga 144  Q
    ||    
T  25351 ga 25352  T

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Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 3740 - 3781
Alignment:
Q  40 ttcgtgtttggttatgataattcaaccgacacctataaggtt 81  Q
    |||||||||| ||||||||||||||||||||  |||||||||    
T  3740 ttcgtgtttgtttatgataattcaaccgacatttataaggtt 3781  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 42297807 - 42297859
Alignment:
Q  109 gtgagagtctttaccttgggtgataatgtttggagaactattaaaagttttcc 161  Q
    |||||||||||||  ||||  ||||||||||||||||||||| ||||||||||    
T  42297807 gtgagagtctttagtttggaagataatgtttggagaactattcaaagttttcc 42297859  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 2910627 - 2910673
Alignment:
Q  43 gtgtttggttatgataattcaaccgacacctataaggttgtagcctt 89  Q
    |||||||||||||||||||||||  |||| ||||||||||| |||||    
T  2910627 gtgtttggttatgataattcaactcacacttataaggttgtggcctt 2910673  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 11982135 - 11982095
Alignment:
Q  43 gtgtttggttatgataattcaaccgacacctataaggttgt 83  Q
    ||||||||||||| |||||||| |||||| |||||||||||    
T  11982135 gtgtttggttatgttaattcaagcgacacttataaggttgt 11982095  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 39379477 - 39379425
Alignment:
Q  106 gatgtgagagtctttaccttgggtgataatgtttggagaactattaaaagttt 158  Q
    ||||||||||| || |  |||||||||||||||||||||| |||| |||||||    
T  39379477 gatgtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt 39379425  T

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