View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_88 (Length: 252)
Name: NF1348_low_88
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_88 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 42658115 - 42658343
Alignment:
| Q |
23 |
atcaaaagcacacaacaccataagaaatacataatgtaacaacattggtgcactaaagaaagagnnnnnnnnnntatccaagatgccccctgatatactt |
122 |
Q |
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| T |
42658115 |
atcaaaagcacacaacaccataagaaatacataatgtaacaacattggtgcactaaagaaagagaaaaaaaaa-tatccaagatgccccctgatatactt |
42658213 |
T |
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| Q |
123 |
catattcgtcctcttgttcaattttcacctccacacacaactcaagtaaaagaaaatcaaccttctatattttacaaatatcaaaaagtaacaaaaagga |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42658214 |
catattcgtcctcttgttcaattttcacctccacacacaactcaagtaaaagaaaatcaaccttctatatttcacaaatatcaaaaagtaacaaaaagga |
42658313 |
T |
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| Q |
223 |
tgaatctcacaaaaaagaaactcatcccta |
252 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42658314 |
tgaatctcacaaaaaagaaactcatcccta |
42658343 |
T |
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