View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1348_low_89 (Length: 251)

Name: NF1348_low_89
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1348_low_89
NF1348_low_89
[»] chr1 (3 HSPs)
chr1 (30-204)||(15374746-15374919)
chr1 (92-212)||(2129343-2129461)
chr1 (145-214)||(11927469-11927540)
[»] chr2 (2 HSPs)
chr2 (110-214)||(10928068-10928171)
chr2 (101-214)||(40140310-40140422)
[»] chr6 (4 HSPs)
chr6 (92-214)||(8564646-8564767)
chr6 (101-214)||(10041237-10041350)
chr6 (30-85)||(28299032-28299087)
chr6 (30-85)||(28512986-28513041)
[»] chr8 (1 HSPs)
chr8 (107-212)||(23842617-23842720)
[»] chr5 (1 HSPs)
chr5 (145-214)||(7778713-7778783)
[»] chr7 (1 HSPs)
chr7 (146-188)||(10024444-10024486)
[»] scaffold0642 (1 HSPs)
scaffold0642 (101-210)||(8222-8330)
[»] scaffold0345 (1 HSPs)
scaffold0345 (101-210)||(18135-18243)
[»] scaffold0105 (1 HSPs)
scaffold0105 (101-210)||(20739-20847)
[»] chr4 (1 HSPs)
chr4 (101-210)||(8194083-8194191)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 204
Target Start/End: Complemental strand, 15374919 - 15374746
Alignment:
Q  30 aataaaatttcagagcaggtggtagaagacaagagcaccttcggggtgtaaacctagttgatataaccctccccttgttggcggacctaattaattttta 129  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||||||||    
T  15374919 aataaaatttcagagcaggtggtagaagacaaaagtaccttcggggtgtaaacctaattgatataaccccgccctttttggcggacctaattaattttta 15374820  T
Q  130 tgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaacgtca 204  Q
    || |||| ||| || ||||||||||||||| ||   |||||||||| ||||||||||||||||||||||||||||    
T  15374819 tg-aaaaccaagttatgcaaggaattgaatcagggcgcacataaaatgttcatttttttaaagtcactaacgtca 15374746  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 2129343 - 2129461
Alignment:
Q  92 ataaccctccccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaa 191  Q
    |||||||  ||||| |||||||||| |||||||||||||||||||| ||  |||||||| |||| |||||| |||||||| |||||||||||||||| ||    
T  2129343 ataacccaaccctttttggcggacccaattaatttttatgaaaaaa-aaggtctgcaagaaattaaattaggtagcacatgaaaagttcattttttt-aa 2129440  T
Q  192 gtcactaacgtcattgcaatt 212  Q
    ||||||| || ||||||||||    
T  2129441 gtcactatcgccattgcaatt 2129461  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 11927469 - 11927540
Alignment:
Q  145 tgcaaggaattgaattagatagcacataaaaagttcattttt--ttaaagtcactaacgtcattgcaattcc 214  Q
    ||||||||||||||| || |||||||  |||| |||||||||    ||| ||||||||||||||||||||||    
T  11927469 tgcaaggaattgaatcaggtagcacaagaaaaattcatttttaaaaaaaatcactaacgtcattgcaattcc 11927540  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 10928068 - 10928171
Alignment:
Q  110 gcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcattttttt-aaagtcactaacgtcattgc 208  Q
    ||||||||||||||||||||||||||||  || |||||||| |||||||| || |||||||| |||||||||||||||| ||||||| ||| | ||||||    
T  10928068 gcggacctaattaatttttatgaaaaaa--aagtctgcaagaaattgaatcaggtagcacatgaaaagttcatttttttaaaagtcattaatgccattgc 10928165  T
Q  209 aattcc 214  Q
    ||||||    
T  10928166 aattcc 10928171  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 40140422 - 40140310
Alignment:
Q  101 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 200  Q
    ||||| |||| || ||||||||||||||||||||||| ||| |  |||||||||||||| || || ||||| |||||||||||||||| |||||||| ||    
T  40140422 ccctttttggtgggcctaattaatttttatgaaaaaaaaaagttcgcaaggaattgaatcaggtaacacatgaaaagttcattttttt-aagtcacttac 40140324  T
Q  201 gtcattgcaattcc 214  Q
     ||||| |||||||    
T  40140323 atcattacaattcc 40140310  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 8564767 - 8564646
Alignment:
Q  92 ataaccctccccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttt-taa 190  Q
    |||||||| ||||| ||| ||| |||||| |||||| |||||||||  |  | ||||||||||||||| || |||||||  |||| ||||||||||  ||    
T  8564767 ataaccctgccctttttgacgggcctaataaattttaatgaaaaaa--aggtatgcaaggaattgaatcaggtagcacaagaaaaattcattttttaaaa 8564670  T
Q  191 agtcactaacgtcattgcaattcc 214  Q
    | ||||||||||||||||||||||    
T  8564669 aatcactaacgtcattgcaattcc 8564646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 10041350 - 10041237
Alignment:
Q  101 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttca-tttttttaaagtcactaa 199  Q
    ||||| |||||||||||| |||||||||||||||||| |  | | |||||||||||||| |  |||||||| ||||  ||| ||||||||||||||| ||    
T  10041350 ccctttttggcggacctagttaatttttatgaaaaaataggtcc-gcaaggaattgaatcaagtagcacatgaaaaaatcattttttttaaagtcaccaa 10041252  T
Q  200 cgtcattgcaattcc 214  Q
    |  |||| |||||||    
T  10041251 caccatttcaattcc 10041237  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 28299087 - 28299032
Alignment:
Q  30 aataaaatttcagagcaggtggtagaagacaagagcaccttcggggtgtaaaccta 85  Q
    |||||||||||||||||||||||||| ||   ||||| ||||||||||| ||||||    
T  28299087 aataaaatttcagagcaggtggtagatgatgggagcaacttcggggtgtcaaccta 28299032  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 28512986 - 28513041
Alignment:
Q  30 aataaaatttcagagcaggtggtagaagacaagagcaccttcggggtgtaaaccta 85  Q
    |||||||||||||||||||||||||| ||   ||||| ||||||||||| ||||||    
T  28512986 aataaaatttcagagcaggtggtagatgatgggagcaacttcggggtgtcaaccta 28513041  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 23842617 - 23842720
Alignment:
Q  107 ttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaacgtcatt 206  Q
    |||||| ||||||||||  |||||| ||||| ||  | |||||||| |||||| || |||||||| |||  || ||||||||||||||||||||||||||    
T  23842617 ttggcgtacctaattaaactttatgcaaaaa-aaggtatgcaagga-ttgaatcaggtagcacatgaaatatttatttttttaaagtcactaacgtcatt 23842714  T
Q  207 gcaatt 212  Q
    ||||||    
T  23842715 gcaatt 23842720  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 7778713 - 7778783
Alignment:
Q  145 tgcaaggaattgaattagatagcacataaaaagttcatttttt-taaagtcactaacgtcattgcaattcc 214  Q
    ||||||||||||||| || |||||||  |||| ||||||||||  ||| ||||||||||||||||||||||    
T  7778713 tgcaaggaattgaatcaggtagcacaagaaaaattcattttttaaaaaatcactaacgtcattgcaattcc 7778783  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 10024486 - 10024444
Alignment:
Q  146 gcaaggaattgaattagatagcacataaaaagttcattttttt 188  Q
    |||||||||||||| ||||||||||| |||||||| |||||||    
T  10024486 gcaaggaattgaatcagatagcacatgaaaagttctttttttt 10024444  T

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Target: scaffold0642 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 8222 - 8330
Alignment:
Q  101 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 200  Q
    ||||| ||||| ||| |||||||||||  |||||||| ||  ||| |||| |||||||| ||  | ||||| ||||||||||||| ||||||||| |||     
T  8222 ccctttttggcagacataattaattttcttgaaaaaa-aaggtctccaagaaattgaatcaggcaacacatgaaaagttcattttattaaagtcattaat 8320  T
Q  201 gtcattgcaa 210  Q
    | ||||||||    
T  8321 gccattgcaa 8330  T

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Target: scaffold0345 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 18135 - 18243
Alignment:
Q  101 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 200  Q
    ||||| ||||| ||| |||||||||||  |||||||| ||  ||| |||| |||||||| ||  | ||||| ||||||||||||| ||||||||| |||     
T  18135 ccctttttggcagacataattaattttcttgaaaaaa-aaggtctccaagaaattgaatcaggcaacacatgaaaagttcattttattaaagtcattaat 18233  T
Q  201 gtcattgcaa 210  Q
    | ||||||||    
T  18234 gccattgcaa 18243  T

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Target: scaffold0105 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 20847 - 20739
Alignment:
Q  101 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 200  Q
    ||||| ||||| ||| |||||||||||  |||||||| ||  ||| |||| |||||||| ||  | ||||| ||||||||||||| ||||||||| |||     
T  20847 ccctttttggcagacataattaattttcttgaaaaaa-aaggtctccaagaaattgaatcaggcaacacatgaaaagttcattttattaaagtcattaat 20749  T
Q  201 gtcattgcaa 210  Q
    | ||||||||    
T  20748 gccattgcaa 20739  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 8194191 - 8194083
Alignment:
Q  101 cccttgttggcggacctaattaatttttatgaaaaaacaaattctgcaaggaattgaattagatagcacataaaaagttcatttttttaaagtcactaac 200  Q
    ||||| ||||| ||| |||||||||||  |||||||| ||  ||| |||| |||||||| ||  | ||||| ||||||||||||| ||||||||| |||     
T  8194191 ccctttttggcagacataattaattttcttgaaaaaa-aaggtctccaagaaattgaatcaggcaacacatgaaaagttcattttattaaagtcattaat 8194093  T
Q  201 gtcattgcaa 210  Q
    | ||||||||    
T  8194092 gccattgcaa 8194083  T

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