View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1348_low_9 (Length: 607)
Name: NF1348_low_9
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 87 - 283
Target Start/End: Complemental strand, 37248974 - 37248789
Alignment:
| Q |
87 |
cagaccggcatgatatggttgttaatttctttgactaaattaaactcatttcaagaggaaacaataacacagttagataagatttgacccaaactaaaac |
186 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37248974 |
cagaccggcatgatgtggatgttaatttctttgactaaattaaactcatttcaagaggaaacaataacacagttagataagatttgacccaaactaaaac |
37248875 |
T |
|
| Q |
187 |
atttcattaattaaactgatgattaccacaaacattgaaaatctagacacatcaaaaactaatcaaaagacagaggtacgctagatccgatatcaga |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37248874 |
atttcattaattaaactgatgattaccacaaacattgaaaatctagacacatc-----------aaaagacagaggtacgctagatccgatatcaga |
37248789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 37239050 - 37238969
Alignment:
| Q |
334 |
gcagacactttaatttattagaccccattacattattataaaaccatagatcaacctagagcttcaaatcatggtcgatatc |
415 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37239050 |
gcagacaccttaatttattagaccccattacattattataaaaccatagatcaacctagagcttcaaatcatggtcgatatc |
37238969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 338 - 415
Target Start/End: Complemental strand, 37248734 - 37248657
Alignment:
| Q |
338 |
acactttaatttattagaccccattacattattataaaaccatagatcaacctagagcttcaaatcatggtcgatatc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37248734 |
acactttaatttattagaccccattacattattataaaaccatagatcaacctagagcttcaaatcatggtcgatatc |
37248657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 493
Target Start/End: Complemental strand, 37238939 - 37238891
Alignment:
| Q |
445 |
tgcttcctatttcaaacaaactatcaacccacaccactggtcgttcctc |
493 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
37238939 |
tgcttcctatttcaaacatactatcaccccacaccatcggtcgttcctc |
37238891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 493
Target Start/End: Complemental strand, 37248627 - 37248579
Alignment:
| Q |
445 |
tgcttcctatttcaaacaaactatcaacccacaccactggtcgttcctc |
493 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
37248627 |
tgcttcctatttcaaacatactatcaccccacaccatcggtcgttcctc |
37248579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University