View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_92 (Length: 251)
Name: NF1348_low_92
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_92 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 6688202 - 6687977
Alignment:
| Q |
1 |
aatgtagtttcttgtaactttgtaatgactatttgattctacattaacaggatgttctcttcatcggatataggtcattgttcgaccgaactgagaaaga |
100 |
Q |
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| T |
6688202 |
aatgtagtttcttgtaactttgtaatgactatttgattctagattaaagggatgttctcttcaccggatataggtcattgttcgaccgaactgagaaaca |
6688103 |
T |
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| Q |
101 |
aatattagtgtggtgttcctctactcttttttctttatcttgttttgnnnnnnnnnnnngttatgattgtgattttgctttccacttggttgttagattg |
200 |
Q |
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| T |
6688102 |
aacattagtgtggtgttcctctactcttttttctttatcttgtttt-------ttttttgttatgtttgtgattttgctttccacttggttgttagattg |
6688010 |
T |
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| Q |
201 |
gatctagatatgttgttgtttgatataatttag |
233 |
Q |
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| T |
6688009 |
gatctagatatgttgttgtttgatataatttag |
6687977 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 5739935 - 5739882
Alignment:
| Q |
167 |
ttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt |
220 |
Q |
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| T |
5739935 |
ttgtggttttgctttacacttggttgctagattagatttagatatgttgttgtt |
5739882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 50432588 - 50432543
Alignment:
| Q |
164 |
tgattgtgattttgctttccacttggttgttagattggatctagat |
209 |
Q |
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| T |
50432588 |
tgattgtggttttgctttccacttcgttgctagattggatctagat |
50432543 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 3786187 - 3786242
Alignment:
| Q |
165 |
gattgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt |
220 |
Q |
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| T |
3786187 |
gattgtaattttgttttacacttggttgctatattagatctagatatgttgttgtt |
3786242 |
T |
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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 490261 - 490208
Alignment:
| Q |
167 |
ttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt |
220 |
Q |
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| T |
490261 |
ttgtggttttgctatacacttggttgctagattagatctagatatattgttgtt |
490208 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 42261426 - 42261373
Alignment:
| Q |
167 |
ttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt |
220 |
Q |
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| T |
42261426 |
ttgtggttttgctatacacttggttgctagattagatctagatatattgttgtt |
42261373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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