View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1348_low_93 (Length: 251)
Name: NF1348_low_93
Description: NF1348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1348_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 22534368 - 22534601
Alignment:
| Q |
11 |
tcttccattgagctctaattacggaatttataacggtgcatatttgaattgcactgttaattggttggcctgtatgagagaccattggattgataatcgc |
110 |
Q |
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| T |
22534368 |
tcttccattgagctctaattatggaatttataatggtgcatatttgaattgcactgttaattggttggcctgtatgagagaccattggattgataatcgc |
22534467 |
T |
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| Q |
111 |
gttccgaaatatgtgattgtttcacttgatctaggtacggagacatactcacagatgttgctccctgaaccttttgacgagaagctgtcaagtgtaccgg |
210 |
Q |
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| T |
22534468 |
gttccgaaatatgtgattgtttcacttgatctaggtacggagacatactcacagatgttgctccctgaaccttttgacgagaagctgtcaaatgtaccgg |
22534567 |
T |
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| Q |
211 |
aacgtgtttgtgtcttgaagggcctcctttgttt |
244 |
Q |
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| T |
22534568 |
aacatgtttgtgtcctgaagggcgtcctttgttt |
22534601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 41 - 244
Target Start/End: Complemental strand, 22525473 - 22525264
Alignment:
| Q |
41 |
taacggtgcatatttgaattgcactgttaattggttggcctgtatgagagaccattggattgataatcgcgttccgaaatatgtgattgtttcacttgat |
140 |
Q |
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| T |
22525473 |
taacagtgtatatttgaattgcactgttaattggttggcttgtatgagagaccattcgattcataatagtgttctgaaatatgtgattgtttcgcttgat |
22525374 |
T |
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| Q |
141 |
ctaggtacggagacatactcacagatgttgctccctgaaccttttgacgagaagctgtcaagt------gtaccggaacgtgtttgtgtcttgaagggcc |
234 |
Q |
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| T |
22525373 |
ttaggtacagagacatactcacggatgtttccccctaaaccttttgacaagaagctgtcaattgtaccagtaccagaacatgtttgtgtcttgaagggct |
22525274 |
T |
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| Q |
235 |
tcctttgttt |
244 |
Q |
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| T |
22525273 |
tcctttgttt |
22525264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 20456359 - 20456395
Alignment:
| Q |
122 |
tgtgattgtttcacttgatctaggtacggagacatac |
158 |
Q |
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| T |
20456359 |
tgtgattgtttcccttgatctaggtactgagacatac |
20456395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 80
Target Start/End: Original strand, 42297907 - 42297935
Alignment:
| Q |
52 |
atttgaattgcactgttaattggttggcc |
80 |
Q |
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| T |
42297907 |
atttgaattgcactgttaattggttggcc |
42297935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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