View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13490_high_1 (Length: 299)
Name: NF13490_high_1
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 24519512 - 24519726
Alignment:
| Q |
19 |
agaataacatctgaatatgagtggaaattttaagacacgagaagcaatggaaatgaagataatgtttatggttttagcctcaccatgaaaacgaaacttg |
118 |
Q |
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| T |
24519512 |
agaataacatctgaatatgagtggaaattttaagacacgagaagcaatggaaatgaagataatgtttatggttttagcctcaccatgaaaacgaaacttg |
24519611 |
T |
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| Q |
119 |
atattttaaataattgtttggtnnnnnnngtgtggtccatttgtcatttggtattttgtcacattcagtataggataattgagggcattctggtcattct |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24519612 |
atattttaaataattgtttggtaaaaaaagtgtggtccatttgtcatttggtattttgtcacattcagtataggataattgagggcattctggtcattct |
24519711 |
T |
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| Q |
219 |
atcaaatttatcttc |
233 |
Q |
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||||||||||||||| |
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| T |
24519712 |
atcaaatttatcttc |
24519726 |
T |
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