View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13490_high_10 (Length: 354)
Name: NF13490_high_10
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 2 - 349
Target Start/End: Complemental strand, 11111455 - 11111107
Alignment:
| Q |
2 |
aatactacaatgacagcgtgaattccatccttggccaaatcaatgcacttgattatttctttgccaagaagttcaattccaacagaaaaatcaaatagtc |
101 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11111455 |
aatactacaatgacagcatgaattccatccttggccaaatcaatgcacttgattatttctttgccaagaagttcaattccaacagaaaaatcaaatagtc |
11111356 |
T |
|
| Q |
102 |
ctg-aaaaacatttttctggttaaaggtatacaacaaagtttctgccacaaactcatttaacaaccaatttagacaaggattctaaaatttgctttctaa |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11111355 |
ctgtaaaaacatttttctggttaaaggtatacaacaaagtttctgccacaaactcatttaacaaccaatttagacacggattctaaaatttgctttctaa |
11111256 |
T |
|
| Q |
201 |
ataggtctagctatggagactgaattaattcaatccttcaattgttcgataaatagtgaaattttagcagtgctatttcaccaaatactacatatgtatt |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11111255 |
ataggtctagctatggagactgaattaattcgatccttcaattgttcgataaatagtgaaattttagcagtgctatttcaccaaatactacatatgtatt |
11111156 |
T |
|
| Q |
301 |
tacctggactatcaataacattaacagtctgtccatcgttcatctcact |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11111155 |
tacctggactatcaataacattaacagtctgtccatcgttcatctcact |
11111107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 11128474 - 11128372
Alignment:
| Q |
2 |
aatactacaatgacagcgtgaattccatccttggccaaatcaatgcacttgattatttctttgccaagaagttcaattccaacagaaaaatcaaatagtc |
101 |
Q |
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||||||||||| | || || ||||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||| || |
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| T |
11128474 |
aatactacaatcaaggcatggattccatcctttgccaaatcaatgcacttgactatttctttcccaagtagttcaattccaaccgaaaaatcaaataatc |
11128375 |
T |
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| Q |
102 |
ctg |
104 |
Q |
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||| |
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| T |
11128374 |
ctg |
11128372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 11077354 - 11077256
Alignment:
| Q |
26 |
ccatccttggccaaatcaatgcacttgattatttctttgccaagaagttcaattccaacagaaaaatcaaatagtcctgaaaaacatttttctggttaaa |
125 |
Q |
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||||||||||| || ||||||||||||| ||||||||| |||| || ||| |||| |||||| ||||||| ||||| ||||| ||||| ||||||| |
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| T |
11077354 |
ccatccttggcaaagtcaatgcacttgactatttctttcccaataaactcagatccagcagaaacttcaaataatcctgcaaaac--ttttcaggttaaa |
11077257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 11089372 - 11089324
Alignment:
| Q |
20 |
tgaattccatccttggccaaatcaatgcacttgattatttctttgccaa |
68 |
Q |
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||||| ||||||||||| || ||||||||||||| ||||||||| |||| |
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| T |
11089372 |
tgaataccatccttggcaaagtcaatgcacttgactatttctttcccaa |
11089324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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