View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13490_high_11 (Length: 351)

Name: NF13490_high_11
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13490_high_11
NF13490_high_11
[»] chr4 (10 HSPs)
chr4 (1-340)||(510637-510976)
chr4 (1-340)||(18086961-18087300)
chr4 (35-330)||(25422433-25422728)
chr4 (35-340)||(31316911-31317216)
chr4 (35-340)||(33688916-33689220)
chr4 (35-340)||(10322066-10322371)
chr4 (35-340)||(44209118-44209424)
chr4 (35-340)||(35060553-35060861)
chr4 (35-231)||(53571273-53571469)
chr4 (41-231)||(11670476-11670665)
[»] chr7 (12 HSPs)
chr7 (1-340)||(6934575-6934914)
chr7 (35-340)||(46043911-46044217)
chr7 (37-340)||(15131074-15131376)
chr7 (35-340)||(33625155-33625459)
chr7 (35-340)||(46331114-46331422)
chr7 (88-340)||(44167379-44167630)
chr7 (35-340)||(45958349-45958652)
chr7 (35-231)||(38199417-38199613)
chr7 (191-340)||(28094939-28095088)
chr7 (35-231)||(3496014-3496214)
chr7 (35-229)||(43083580-43083777)
chr7 (35-74)||(44167680-44167719)
[»] scaffold0651 (1 HSPs)
scaffold0651 (35-340)||(6482-6787)
[»] chr3 (12 HSPs)
chr3 (35-340)||(45234962-45235267)
chr3 (35-340)||(32943359-32943665)
chr3 (35-340)||(37179311-37179617)
chr3 (39-340)||(53439667-53439970)
chr3 (35-340)||(32147348-32147653)
chr3 (39-340)||(53397455-53397751)
chr3 (35-231)||(50614808-50615005)
chr3 (35-231)||(117174-117371)
chr3 (35-191)||(44557346-44557501)
chr3 (160-340)||(1429778-1429956)
chr3 (282-340)||(27868310-27868368)
chr3 (182-216)||(38634545-38634579)
[»] chr2 (10 HSPs)
chr2 (35-340)||(18672561-18672865)
chr2 (38-340)||(44493252-44493555)
chr2 (35-340)||(43932384-43932691)
chr2 (35-340)||(42487293-42487596)
chr2 (35-340)||(20720308-20720603)
chr2 (35-231)||(21439560-21439756)
chr2 (112-235)||(3105544-3105667)
chr2 (151-231)||(20719135-20719214)
chr2 (261-340)||(23787639-23787718)
chr2 (38-79)||(3104995-3105036)
[»] chr5 (7 HSPs)
chr5 (35-336)||(38693093-38693394)
chr5 (35-340)||(13920401-13920705)
chr5 (35-329)||(41139395-41139690)
chr5 (35-340)||(8217630-8217936)
chr5 (35-340)||(43440497-43440801)
chr5 (35-231)||(26865435-26865631)
chr5 (35-77)||(18950752-18950794)
[»] chr8 (14 HSPs)
chr8 (35-340)||(24451852-24452156)
chr8 (35-340)||(37706376-37706679)
chr8 (35-340)||(35369557-35369861)
chr8 (35-340)||(21135686-21135993)
chr8 (35-340)||(35863408-35863714)
chr8 (35-340)||(16473352-16473655)
chr8 (35-340)||(16477923-16478226)
chr8 (35-241)||(36063149-36063358)
chr8 (35-231)||(39337352-39337549)
chr8 (115-236)||(41280545-41280665)
chr8 (261-340)||(13323428-13323507)
chr8 (88-163)||(13323522-13323597)
chr8 (37-79)||(41281180-41281222)
chr8 (300-333)||(23931998-23932031)
[»] chr6 (4 HSPs)
chr6 (35-340)||(5079123-5079431)
chr6 (35-231)||(17245951-17246147)
chr6 (35-79)||(18502902-18502946)
chr6 (285-340)||(25839494-25839549)
[»] chr1 (11 HSPs)
chr1 (38-340)||(46596394-46596697)
chr1 (35-340)||(30982001-30982306)
chr1 (35-340)||(33708560-33708869)
chr1 (35-340)||(36362719-36363030)
chr1 (35-291)||(12000088-12000345)
chr1 (35-231)||(12367967-12368163)
chr1 (54-215)||(40182032-40182193)
chr1 (35-231)||(37986473-37986669)
chr1 (35-231)||(15054024-15054223)
chr1 (35-231)||(36248696-36248894)
chr1 (35-231)||(29231475-29231673)
[»] scaffold0097 (2 HSPs)
scaffold0097 (35-340)||(24146-24441)
scaffold0097 (151-231)||(22972-23052)
[»] scaffold0003 (1 HSPs)
scaffold0003 (35-231)||(239741-239936)
[»] scaffold0148 (2 HSPs)
scaffold0148 (35-237)||(35611-35812)
scaffold0148 (261-340)||(38474-38553)
[»] scaffold0385 (1 HSPs)
scaffold0385 (35-227)||(9692-9884)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-340)||(172314-172653)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 510976 - 510637
Alignment:
Q  1 ttaatatcattccaattgcggttacaaaagtaattagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  510976 ttaatatcattccaattgcggttacaaaagtaattagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcggc 510877  T
Q  101 aacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  510876 aacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcg 510777  T
Q  201 tcaagataaagaagacgtagtctatcataactagttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  510776 tcaagataaagaagacgtagtctatcataactagttcctgccaagaaaaaaagggcagccccaataaatccatgagatattatttgtaaaatggccccgt 510677  T
Q  301 tgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  510676 tgagcccagtatcacttatagaaccaattcctagaattat 510637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 18086961 - 18087300
Alignment:
Q  1 ttaatatcattccaattgcggttacaaaagtaattagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  18086961 ttaatatcattccaattgcggttacaaaagtaattagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcggc 18087060  T
Q  101 aacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18087061 aacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcg 18087160  T
Q  201 tcaagataaagaagacgtagtctatcataactagttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18087161 tcaagataaagaagacgtagtctatcataactagttcctgccaagaaaaaaagggcagccccaataaatccatgagatattatttgtaaaatggccccgt 18087260  T
Q  301 tgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18087261 tgagcccagtatcacttatagaaccaattcctagaattat 18087300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 35 - 330
Target Start/End: Original strand, 25422433 - 25422728
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||| | |||||||| | ||    
T  25422433 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcggcaacaaaaccactcatgccagacaatgcaaaaaaa 25422532  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||    
T  25422533 gacatcgataagatagtgaaaatcgtgaatatttttgatattgggatagccattccgcccatttcgtcaggataaagaagacgtaatttatcataactag 25422632  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattc 330  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25422633 ttcctgccaagaaaaaaagggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattc 25422728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 31316911 - 31317216
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| ||| |||||| |||||||||||||    
T  31316911 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcggcaacaaaaccactcgtgcccgacaatgcaagagaa 31317010  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  31317011 gtgatcgataagatagtgaaaatcgtgaatatttttggtattgggatagccattccgcccatttcgtcaagataaagaagacatagtttatcataactag 31317110  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    |||||||||||       ||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||     
T  31317111 ttcctgccaagacaaaaagggcagcgccaataaatccatgagatattatttctaaaacggccccgttgagcccaatatcacttatagaactaattcctaa 31317210  T
Q  335 aattat 340  Q
    ||||||    
T  31317211 aattat 31317216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 33689220 - 33688916
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||| |||||||||||||    
T  33689220 tagtattttcaccatgaaaagatatttttgactagtaattattccaaaaaaa-ctatcaattcggcaacaaaaccactcatgcccgacaatgcaagagaa 33689122  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  33689121 gtcatcgataagatagtgaaaatcgtgaatatttttgacattgggatagtcattccgtccatttcgtcaagataaagaagacgtagtttatcataactag 33689022  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||| |||||||       ||| ||| |||||||||||||||||||||||||||||||  || |||||||||||| ||||||||||| |||||||||||||    
T  33689021 ttcttgccaagaaaaaaagggtagcgccaataaatccatgagatattatttgtaaaacagctccgttgagcccaatatcacttataaaaccaattcctag 33688922  T
Q  335 aattat 340  Q
    ||||||    
T  33688921 aattat 33688916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 10322066 - 10322371
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||| ||||||||||||||||| |||||||||         |||||||||| ||||||||||| ||||| |||| |||||||||||||    
T  10322066 tagtattttcatcatgtaaagatatttttgactattaattattctaaaaaaaactatcaattcagcaacaaaaccactcatacccgacaatgcaagagaa 10322165  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  10322166 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtaatttatcataactag 10322265  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||| |||||||       ||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || |    
T  10322266 ttcttgccaagaaaaaaagggtagcgccaataaatctatgagatattatttgtaaaacggccccgttgagcccaatatcacttatagaaccaatttctgg 10322365  T
Q  335 aattat 340  Q
    ||||||    
T  10322366 aattat 10322371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 44209424 - 44209118
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||         |||| |||||||||||||| || |||||||||| |||||||||||||    
T  44209424 tagtattttaatcatgaaaagatatttttgactggtaattattcaaaaaaaaactataaattcggcaacaaagccactcatgcccgacaatgcaagagaa 44209325  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | ||||||||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  44209324 gtcatcgataagatagtaaaaatcgtgaatatttttggcattagaatagccattccgtccatttcgtcaagataaagaagacgtagtttatcataactag 44209225  T
Q  235 ttcctgccaag-nnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattccta 333  Q
    ||||||| |||         || ||| ||||||||||||||||||||||||||||||| | | |||||||||||| ||||| ||||||||||||||||||    
T  44209224 ttcctgcaaagaaaaaaaatggtagcgccaataaatccatgagatattatttgtaaaacgtctccgttgagcccaatatcatttatagaaccaattccta 44209125  T
Q  334 gaattat 340  Q
    |||||||    
T  44209124 gaattat 44209118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 35060861 - 35060553
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn--ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagag 132  Q
    |||||||||||||||||||||||||||||||||| ||||||||||          |||||| ||||||||||||||| | |||||||| |||||||||||    
T  35060861 tagtattttcatcatgaaaagatatttttgactaataattattccaaaaaaaaaactatcagttcggcaacaaaaccacccatgcccgacaatgcaagag 35060762  T
Q  133 aagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataact 232  Q
    ||| |||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  35060761 aagtcatcgataagatagcgaaaatcgtaaatgtttttggcattgggatatccattccgcccatttcgtcaagataaagaagacgtagtttatcatatct 35060662  T
Q  233 agttcctgccaagnnnnnnngggcagccccaataaatccatgaga-tattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcc 331  Q
    |||||||||||||       ||| |||  |||||||||||||||| |||||||||||||| || || |||||||||| ||| ||||||||||||||||||    
T  35060661 agttcctgccaagaaaaaaagggtagcgtcaataaatccatgagattattatttgtaaaacggaccagttgagcccaatattacttatagaaccaattcc 35060562  T
Q  332 tagaattat 340  Q
    |||||||||    
T  35060561 tagaattat 35060553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 53571469 - 53571273
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||| |||||||| ||||    
T  53571469 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcggcaacaaaaccactcatgcccgacaatgcaaaagaa 53571370  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    | ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53571369 gtcattgataagatggtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 53571273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 11670476 - 11670665
Alignment:
Q  41 tttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaagccatc 140  Q
    |||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||||| |||||| | | |||||||| ||||| ||||    
T  11670476 tttcatcatgaaaatatatttttgactagtaattattccaaaaaaaactatcaattcggcaacaaaaccactcatgtctgacaatgcaaaagaagtcatc 11670575  T
Q  141 gataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11670576 gataagatagtgaaaatcgtga-tatttttggcattgggatagccattccgctcatttcgtcaagataaagaagacgtagtctatcataac 11670665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 6934914 - 6934575
Alignment:
Q  1 ttaatatcattccaattgcggttacaaaagtaattagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  6934914 ttaatatcattccaattgcggttacaaaagtaattagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcggc 6934815  T
Q  101 aacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcg 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6934814 aacaaaaccgctcatgcccgacaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttagcattgggatagccattccgcccatttcg 6934715  T
Q  201 tcaagataaagaagacgtagtctatcataactagttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgt 300  Q
    ||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6934714 tcaagataaagaagatgtagtctatcataactagttcctgccaagaaaaaaagggcagccccaataaatccatgagatattatttgtaaaatggccccgt 6934615  T
Q  301 tgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6934614 tgagcccagtatcacttatagaaccaattcctagaattat 6934575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 46044217 - 46043911
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    |||||||||||||||||||||||||||||||||| ||||||||||         |||||||||||||||||||||| |||||||||| ||||||||||||    
T  46044217 tagtattttcatcatgaaaagatatttttgactaataattattccaaaaaaaaactatcaattcggcaacaaaaccactcatgcccgacaatgcaagaga 46044118  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataacta 233  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  46044117 agtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagtcattccgcccctttcgtcaagataaagaagacgtagtttatcataacta 46044018  T
Q  234 gttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattccta 333  Q
    ||||||||||||       ||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||    
T  46044017 gttcctgccaagaaaaaaagggtagcgccaataaattcatgagatattatttgtaaaacggccccgttgagcccaatatcacttatagaactaattccta 46043918  T
Q  334 gaattat 340  Q
     ||||||    
T  46043917 aaattat 46043911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 37 - 340
Target Start/End: Original strand, 15131074 - 15131376
Alignment:
Q  37 gtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaagc 136  Q
    |||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| |||||||||| |||||||| | |||     
T  15131074 gtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaattatcaattcggcaacaaaaccactcatgcccgacaatgcaacataagt 15131173  T
Q  137 catcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactagtt 236  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  15131174 catcgataagatagtgaaaatcgtgaataattttggcattgggatagccattccgcccattttgtcaagataaagaagacgtagtttatcataactagtt 15131273  T
Q  237 cctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaa 336  Q
    |||||||||       ||| ||| ||||||||||||||||||||||||||||||| || | |||||||| || ||||||||||||||||||||||| |||    
T  15131274 cctgccaag-aaaaaagggtagcaccaataaatccatgagatattatttgtaaaacggtctcgttgagctcaatatcacttatagaaccaattcctggaa 15131372  T
Q  337 ttat 340  Q
    ||||    
T  15131373 ttat 15131376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 33625155 - 33625459
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||| ||||||||||  ||||||| ||||    
T  33625155 tagtattttcatcatgaagagatatttttgactagtaattattccaaaaaaa-ctatcaattcggcaacaaaaccactcatgcccgataatgcaaaagaa 33625253  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |    
T  33625254 gtcatcgataagatagtgaaaatcgtgaatattttttgcattgagatagccattccgcccatttcgtcaagataaagaagacgtaatttatcataactgg 33625353  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    || ||||||||       ||| |||  |||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  33625354 tttctgccaagaaaaaaagggtagcgtcaataaatccatgagatattatttgtaaaacggccgcgttgagcccaatatcacttatagaaccaattcctag 33625453  T
Q  335 aattat 340  Q
    ||||||    
T  33625454 aattat 33625459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 46331114 - 46331422
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn----ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaag 130  Q
    ||||||||||||||||||| |||||||||||||||||||||||||            |||||||||||||||| ||||| ||||||||||  ||||||||    
T  46331114 tagtattttcatcatgaaa-gatatttttgactagtaattattccaaaaagaaaaaactatcaattcggcaaccaaaccactcatgcccgaaaatgcaag 46331212  T
Q  131 agaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataa 230  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||    
T  46331213 agaagtcatcgataagatagtgaaaatcatgaatatttttgacattgggatagtcattccgcccatttcgtcaagataaagaagacttattttatcataa 46331312  T
Q  231 ctagttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattc 330  Q
    |||||||||||| ||       ||| ||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||    
T  46331313 ctagttcctgccgagaaaaaaagggtagcgccaataaatccatgagatattatttgtaaaacggcctcgttgagcccaatatcacttatagaaccaattc 46331412  T
Q  331 ctagaattat 340  Q
    ||| ||||||    
T  46331413 ctataattat 46331422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 88 - 340
Target Start/End: Complemental strand, 44167630 - 44167379
Alignment:
Q  88 ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccat 187  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44167630 ctatcaattcggcaacaaaaccactcatgcccgacaatgcaagagaagtcatcgataagataatgaaaatcgtgaatatttttggcattgggatagccat 44167531  T
Q  188 tccgcccatttcgtcaagataaagaagacgtagtctatcataactagttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgt 287  Q
    ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||       ||  ||| |||||||||||| || |||||||||||    
T  44167530 tccacccatttcgttaagataaagaagacgtagtttatcataactagttcctgccaag-aaaaaaggctagcgccaataaatccacgaaatattatttgt 44167432  T
Q  288 aaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  44167431 aaaacggccccgttgagtccaatatcacttatagaaccaattcctagaattat 44167379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 45958652 - 45958349
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||         |||||||||||||||||||| | ||||||||   ||||||||||||    
T  45958652 tagtattttcaccatgaaaagatatttttgactagtaattactccaaaaaaaaactatcaattcggcaacaaaatcactcatgcctcacaatgcaagaga 45958553  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataacta 233  Q
    || ||||||||||||||||||||| || |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||  | | |||||||||||    
T  45958552 agtcatcgataagatagtgaaaattgttaatatttttgacattaggatagtcattccgcccatttcgtcaagataaagaagac--attttatcataacta 45958455  T
Q  234 gttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattccta 333  Q
    ||| ||||||||       ||| ||| | ||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||    
T  45958454 gtttctgccaag-aaaaaagggtagcactaataaatccgtgagatattatttgtaaaacggcctcgttgagcccaatatcacttatagaaccaattccta 45958356  T
Q  334 gaattat 340  Q
    |||||||    
T  45958355 gaattat 45958349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 38199417 - 38199613
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||| |||||| |||||||||| |||||||| | |||||||| ||||    
T  38199417 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactattaattcgtcaacaaaaccactcatgcctgacaatgcaaaagaa 38199516  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||    
T  38199517 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagtcattccgttcatttcgtcaagataaagaagacgtagtctatcataac 38199613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 191 - 340
Target Start/End: Original strand, 28094939 - 28095088
Alignment:
Q  191 gcccatttcgtcaagataaagaagacgtagtctatcataactagttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaa 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||    
T  28094939 gcccatttcgtcaagataaagaagacgtagtctatcataactagttcctgccaagaaaaaaagtgcagccccaataaatccatgagatattatttgtaaa 28095038  T
Q  291 atggccccgttgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28095039 atggcctcgttgagcccagtatcacttatagaaccaattcctagaattat 28095088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 3496014 - 3496214
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaat----gcaag 130  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||        |||||||||||||||||||||| |||||||||| ||||    ||||     
T  3496014 tagtattttcatcaggaaaatatatttttgattagtaattattccataaaaaactatcaattcggcaacaaaaccactcatgcccgacaattaatgcaaa 3496113  T
Q  131 agaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataa 230  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3496114 agaagtcatcgataaaatagtgaaaatcatgaatatttttggcattgggatagtcattccgcccatttcgtcaagataaagaagacgtagtctatcataa 3496213  T
Q  231 c 231  Q
    |    
T  3496214 c 3496214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 43083777 - 43083580
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn---ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaaga 131  Q
    |||||||||||||| ||||||| | ||||||||||||||||||||           |||||||||||||||||||| | |||||| ||| |||||||| |    
T  43083777 tagtattttcatcaagaaaagaaacttttgactagtaattattccaaaaaaaaaaactatcaattcggcaacaaaatcactcatgtccgacaatgcaaaa 43083678  T
Q  132 gaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcata 229  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  43083677 gaagtcatcgataagatagtgaaaatcgtgaatatttttgacattgggatagccattccatccatttcgtcaagataaagaagacatagtctatcata 43083580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 44167719 - 44167680
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaatt 74  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  44167719 tagtattttcatcataaaaatatatttttgactagtaatt 44167680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 6787 - 6482
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| ||| |||||| |||||||||||||    
T  6787 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcggcaacaaaaccactcgtgcccgacaatgcaagagaa 6688  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  6687 gtgatcgataagatagtgaaaatcgtgaatatttttggtattgggatagccattccgcccatttcgtcaagataaagaagacatagtttatcataactag 6588  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    |||||||||||       ||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||     
T  6587 ttcctgccaagacaaaaagggcagcgccaataaatccatgagatattatttctaaaacggccccgttgagcccaatatcacttatagaactaattcctaa 6488  T
Q  335 aattat 340  Q
    ||||||    
T  6487 aattat 6482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 45235267 - 45234962
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||||| |||||||||| |||||||||||||    
T  45235267 tagtattttcatcatgaaaagatatttttgactagcaattattccaaaaaaaactatcaattcggcaacaaaaccactcatgcccgacaatgcaagagaa 45235168  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  45235167 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccctccatttcgtcaagataaagaagacgtagtttatcataactag 45235068  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||| |||||||       ||| ||| ||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  45235067 ttcatgccaagaaaaaaagggtagcgccaataagtccatgagatattatttgtaaaacggcctcgttgagcccaatatcacttatagaaccaattcctag 45234968  T
Q  335 aattat 340  Q
    ||||||    
T  45234967 aattat 45234962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 32943359 - 32943665
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    |||||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||||||||| |||||||||| ||||||||||||    
T  32943359 tagtattttcatcatgaaaatatatttttgactagtaattattccaaaaaaaaactatcaattcggcaacaaaaccactcatgcccgacaatgcaagaga 32943458  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataacta 233  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||    
T  32943459 agtcatcgataagatagtgaaaatcgtgaatatttttggcattaggataaccattccgcctatttcttcaagataaagaagacgtagtttatcataacta 32943558  T
Q  234 gttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattccta 333  Q
    |||||||| |||       ||| ||  | ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  32943559 gttcctgcgaagaaaaaaagggtagtgcaaataaatccatgagatattatttgtaaaatggcaccgttgagcccaatatcacttatagaaccaattccta 32943658  T
Q  334 gaattat 340  Q
    |||||||    
T  32943659 gaattat 32943665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 37179311 - 37179617
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn--ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagag 132  Q
    |||||||||||||||||||||||||||||||||| |||||||||           ||||||||||||||||||||||  ||||||||| |||||||||||    
T  37179311 tagtattttcatcatgaaaagatatttttgactaataattattcaaaaaaagaaactatcaattcggcaacaaaaccaatcatgcccgacaatgcaagag 37179410  T
Q  133 aagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataact 232  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||||||| || || | ||||||||||    
T  37179411 aagtcatcgataagatagtgaaaatcgtgaatatttttggcattgtgatag-cattccgcccatttcggtaagataaagaaaacttaatttatcataact 37179509  T
Q  233 agttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcct 332  Q
    |||||||||||||       | | ||| |||||||||||||||||||||||||||||||  ||| |||||| |||| |||||||||||||||||||||||    
T  37179510 agttcctgccaagaaaaaaagtgtagcgccaataaatccatgagatattatttgtaaaacagcctcgttgaacccaatatcacttatagaaccaattcct 37179609  T
Q  333 agaattat 340  Q
    ||||||||    
T  37179610 agaattat 37179617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 39 - 340
Target Start/End: Original strand, 53439667 - 53439970
Alignment:
Q  39 attttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaagcca 138  Q
    ||||||||||||||||||||||||| |||| ||| || |||        |||||||||||||||||||||| |||||| ||  |||||||||||||| ||    
T  53439667 attttcatcatgaaaagatatttttaactaataactactccaaaaaaaactatcaattcggcaacaaaaccactcatgtccaacaatgcaagagaagtca 53439766  T
Q  139 tcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactagttcc 238  Q
    || |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  53439767 tcaataagataatgaaaattgtgaatatttttgacattgggatagccattgcgcccatttcgtcaagataaagaagacgtagtttatcataactagttcc 53439866  T
Q  239 tgccaag--nnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaa 336  Q
    | |||||         ||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||    
T  53439867 taccaagaaaaaaaaggggtagctccaataaatccatgagatattatttgtaaaacggccccgctgagcccaatatcatttatagaaccaattcctagaa 53439966  T
Q  337 ttat 340  Q
    ||||    
T  53439967 ttat 53439970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 32147348 - 32147653
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn----ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaag 130  Q
    |||||||||||||||||||| ||||||||||||||||||||||||            |||||||||||||||||||||| |||||||  | |||||||||    
T  32147348 tagtattttcatcatgaaaatatatttttgactagtaattattccaaaaaaaaaaaactatcaattcggcaacaaaaccactcatgc--gacaatgcaag 32147445  T
Q  131 agaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataa 230  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  32147446 agaagtcatcgataagatagtgaaaatcgtgaatatttttgacattggg--agccattccgcccattttgtcaggataaagaagacgtagtttatcataa 32147543  T
Q  231 ctagttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattc 330  Q
    ||||| | ||| |||       ||| |||  |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||    
T  32147544 ctagtacttgcgaagaaaaaaagggtagcatcaataaatccatgagatattatttgtcaaatggccccgttgagcccaatatcacttatagaaccaactc 32147643  T
Q  331 ctagaattat 340  Q
    ||||||||||    
T  32147644 ctagaattat 32147653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 39 - 340
Target Start/End: Original strand, 53397455 - 53397751
Alignment:
Q  39 attttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaagcca 138  Q
    |||||||||||||||| ||||||||||||||||| || |||        |||||||||||||||||||| | |||||||||| |||||||||||||  ||    
T  53397455 attttcatcatgaaaaaatatttttgactagtaactactccaaaaaaaactatcaattcggcaacaaaatcactcatgcccgacaatgcaagagaaatca 53397554  T
Q  139 tcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactagttcc 238  Q
    || |||||||| ||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  53397555 tcaataagataatgaaaattgtgaatatttttggcattggaatagtcattgcgcccatttcgtcaagataaagaagacgtagtttatcataattagttcc 53397654  T
Q  239 tgccaag-nnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaat 337  Q
    | |||||        ||| ||  |||||||      |||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  53397655 taccaagaaaaaaaagggtagtgccaataa------gagatattatttgtaaaacggccccgttgagcccaatatcatttataaaaccaattcctagaat 53397748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 50615005 - 50614808
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||        |||||||||||||||||||||| |||||||||| |||||||| ||||    
T  50615005 tagtattttcatcaagaaaatatatttttgactagtaattattccaaaaaaaactatcaattcggcaacaaaaccactcatgcccgacaatgcaaaagaa 50614906  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagac-gtagtctatcataac 231  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  50614905 gtcattgataagatagtgaaaatcgtgaatatttttggcattgggatagtcattccacccatttcgtcaagataaagaagacggtagtctatcataac 50614808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 117371 - 117174
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    |||||||||||||||||||| ||||||||||||||||||||||||         |||||||||||  ||||||||| |||||||| | |||||||| |||    
T  117371 tagtattttcatcatgaaaatatatttttgactagtaattattccaaaaaaaaactatcaattcgataacaaaacctctcatgcctgacaatgcaaaaga 117272  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
     | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  117271 tgtcatcgataagatagtgaaaatcgtgaatatttttggcattgagatatccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 117174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 35 - 191
Target Start/End: Complemental strand, 44557501 - 44557346
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||  |||||||||| |||||||| ||||    
T  44557501 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaa-ctatcaattcggcaacaaaactactcatgcccgacaatgcaaaagaa 44557403  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccg 191  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44557402 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccg 44557346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 160 - 340
Target Start/End: Original strand, 1429778 - 1429956
Alignment:
Q  160 tgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactagttcctgccaagnnnnnnngggcagc 259  Q
    |||||||||||||||||||||   | |||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||       ||| |||    
T  1429778 tgaatatttttggcattgggac--ctattccatccatttcgtcaagataaagaaaacgtagtttatcataactagttcctgccaagaaaaaaagggtagc 1429875  T
Q  260 cccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattat 340  Q
     |||||||||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||||||||||||||||    
T  1429876 gccaataaatccatgagatattatttgtaaaacagtcccgttgagcccaatatcacttatagaaccaattcctagaattat 1429956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 27868368 - 27868310
Alignment:
Q  282 atttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    |||||||||| |||| ||||| | ||| |||||||||||||||||||||||||||||||    
T  27868368 atttgtaaaacggcctcgttgcgaccaatatcacttatagaaccaattcctagaattat 27868310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 38634545 - 38634579
Alignment:
Q  182 agccattccgcccatttcgtcaagataaagaagac 216  Q
    |||||||||||||||||||||||||||||||||||    
T  38634545 agccattccgcccatttcgtcaagataaagaagac 38634579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 18672561 - 18672865
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||| |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||| ||| |||||||||||||    
T  18672561 tagtatttttatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcggcaacaaaaccactcatgtccgacaatgcaagagaa 18672660  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||    
T  18672661 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccatttcgcccatttcgtcaagataaataagacgtagtttatcataactag 18672760  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||| |||||||       ||| |||  ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  18672761 ttcttgccaag-aaaaaagggtagcgtcaataaatccatgagatgttatttgtaaaacggccccgttgagcccaatatcacttatagaaccaattcctag 18672859  T
Q  335 aattat 340  Q
    ||||||    
T  18672860 aattat 18672865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 38 - 340
Target Start/End: Original strand, 44493252 - 44493555
Alignment:
Q  38 tattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaagc 136  Q
    ||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||||||||| |||||||||| ||||||||||||||     
T  44493252 tattttcatcatgaaaatatatttttgactagtaattattccaaaaaaaaactatcaattcggcaacaaaaccactcatgcccgacaatgcaagagaagt 44493351  T
Q  137 catcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactagtt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  44493352 catcgataagatagtgaaaatcgtgaatatttttggcattgggattgtcattccgcccatttcatcaagataaagaagacgtagtttatcataactagtt 44493451  T
Q  237 cctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaa 336  Q
    |||||||||       ||| ||  ||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||| ||||||||||    
T  44493452 cctgccaagaaaaaaagggtagtgccaataaatccatgagatattatttgtaaaacggctccgttgaggccaatatcacttatagaaccgattcctagaa 44493551  T
Q  337 ttat 340  Q
    ||||    
T  44493552 ttat 44493555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 43932691 - 43932384
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn--ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagag 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||          ||||||||| |||||||||||| ||||| |||| |||||||||||    
T  43932691 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaaaactatcaattaggcaacaaaaccactcatacccgacaatgcaagag 43932592  T
Q  133 aagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataact 232  Q
    ||| |||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  43932591 aagtcatcgataagatagtgaaaatcatgaatattttttacattgggatagccattccgcccatttcgttaagataaagaagacgtagtttatcataact 43932492  T
Q  233 agttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcct 332  Q
    || || |||||||       ||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  43932491 aggtcttgccaagaaaaaaagggtagcaccaataaattcatgagatattatttgtaaaacggccccgttgagcccaatatcacttatagaaccaattcct 43932392  T
Q  333 agaattat 340  Q
    ||||||||    
T  43932391 agaattat 43932384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 42487596 - 42487293
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||||||||||||||||||||||||||||||| ||||         |||||||||| |||||||| || ||||||| || |||||||||||||    
T  42487596 tagtattttcatcatgaaaagatatttttgactagtaat-attcaaataaaaactatcaattcagcaacaaagccactcatgctcgacaatgcaagagaa 42487498  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | ||| |||||||| |||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  42487497 gtcattgataagatggtgaaaatcgtgaatatttttg-cattgggatgtccattccgtccatttcgtcaagataaagaagacgtagtttatcataactag 42487399  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    |||||||||||       ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||     
T  42487398 ttcctgccaagaaaaaaagggtagcgccaataaatccatgagatattatttgtaaaacggccccgttgagctcaatatcacttatagaaccaattcctac 42487299  T
Q  335 aattat 340  Q
    ||||||    
T  42487298 aattat 42487293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 20720308 - 20720603
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||| | |||||| ||| |||||||||||||    
T  20720308 tagtattttcatcatgaaaagatatttttgactagtaattactccaaaaaagactatcaattcggcaacaaaatcactcatgtccgacaatgcaagagaa 20720407  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | |||||||||||||||| | ||          |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||    
T  20720408 gtcatcgataagatagtggatat----------tttggcattgggatagtcattccgcccatttcgtcaagataaagaagatgtagtttatcataattag 20720497  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||||| |||||       ||| ||| |||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  20720498 ttcctcccaagaaaaaaagggtagcaccaataaatctatgagatattatttgtaaaacggcctcgttgagcccattatcacttatagaaccaattcctag 20720597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 21439756 - 21439560
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| | |||||||||| |||||||| ||||    
T  21439756 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcggcaacaaaatcactcatgcccgacaatgcaaaagaa 21439657  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    | ||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  21439656 gtcatcgataagataatgaaaatcgtgaatattattggcattgagatagtcattccgcctatttcgtcaagataaagaagacgtagtctatcataac 21439560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 3105544 - 3105667
Alignment:
Q  112 tcatgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaag 211  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  3105544 tcatgcccgacaatgcaagagaagtcatcgataagatagtgaaaatcttgaatatttttggcattgggatagtcattccgcccatttcttcaaaataaag 3105643  T
Q  212 aagacgtagtctatcataactagt 235  Q
    ||| |||||| |||||||||||||    
T  3105644 aaggcgtagtttatcataactagt 3105667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 20719214 - 20719135
Alignment:
Q  151 tgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20719214 tgaaaatcgtgattatttttggcattgggatagccattccgcccatttcgtcaagataaa-aagacgtagtctatcataac 20719135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 23787639 - 23787718
Alignment:
Q  261 ccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    ||||||||||||||| ||||||||||||||| ||| | |||||||||| |||||||  ||||||||||||||||||||||    
T  23787639 ccaataaatccatgaaatattatttgtaaaacggctctgttgagcccaatatcactactagaaccaattcctagaattat 23787718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 3104995 - 3105036
Alignment:
Q  38 tattttcatcatgaaaagatatttttgactagtaattattcc 79  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3104995 tattttcatcatgaaaagatatttttgactagtaattattcc 3105036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 336
Target Start/End: Complemental strand, 38693394 - 38693093
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||||||||||||||||||||||||||| |||||||||        |||||||||| ||||||||||| ||||||| || |||||||||||||    
T  38693394 tagtattttcatcatgaaaagatatttttgactagaaattattccaaaaaaaactatcaattcagcaacaaaaccactcatgctcgacaatgcaagagaa 38693295  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  38693294 gtcatcgataatatagtgaaaatcgtgaatatttttggcattaggatagccattccgcccatttcgtcaagataaaaaagacatagtttatcataactag 38693195  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    |||||||||||       ||| ||| |||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||| |||    
T  38693194 ttcctgccaagaaaaaaagggtagcgccaataaatccatgagatattatttgtaaaacagccccgttgagcccaatatcacttatagaaccaattcttag 38693095  T
Q  335 aa 336  Q
    ||    
T  38693094 aa 38693093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 13920401 - 13920705
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |        ||||||||| |||||||||||| ||||| |||| |||||||||||||    
T  13920401 tagtattttcatcataaaaagatatttttgactagtaattatttcaaaaaaa-ctatcaattaggcaacaaaaccactcatacccgacaatgcaagagaa 13920499  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  13920500 gtcatcgataagatagtgaaaatcgtgaatatttttgacattgggatagccattccgcccatttcgtcaagataaagaaaacgtagtttatcataactag 13920599  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||||| |||||       ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||    
T  13920600 ttcctcccaagaaaaaaagggcagcaccaataaatccataagatattatttgtaaaacggccccgttgagcccaatattacttatagaacaaattcctag 13920699  T
Q  335 aattat 340  Q
    ||||||    
T  13920700 aattat 13920705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 35 - 329
Target Start/End: Original strand, 41139395 - 41139690
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    |||||||||||||||||||||||||||| ||||||||||||||||         ||||||||| |||||||||||| ||||| |||| ||||||||||||    
T  41139395 tagtattttcatcatgaaaagatattttcgactagtaattattccaaaaaaaaactatcaatttggcaacaaaaccactcatacccgacaatgcaagaga 41139494  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataacta 233  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  41139495 agtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacatagtttatcataacta 41139594  T
Q  234 gttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaatt 329  Q
    ||||||||||||        || ||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||    
T  41139595 gttcctgccaagaaaaaaatggtagcgccaataaatccatgagatattatttgtaaaacggccctgttgagcccaatatcacttatagaaccaatt 41139690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 8217936 - 8217630
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    |||||||||||||||||||||||||||||||||||||| ||||||         |||||||||||||||||||| |  ||||||||  ||||||||||||    
T  8217936 tagtattttcatcatgaaaagatatttttgactagtaaatattccaaaaaaaaactatcaattcggcaacaaaatcattcatgcccaacaatgcaagaga 8217837  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataacta 233  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  8217836 agtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccacccatttcgtcaagataaagaaaacgtagtctatcataacta 8217737  T
Q  234 gttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattccta 333  Q
    ||||||||||||       |||| |  ||||||||||||||||||||||||||||||| ||||| |||||||| | ||||| ||||||||||||||||||    
T  8217736 gttcctgccaagaaaaaaagggcggtgccaataaatccatgagatattatttgtaaaacggccctgttgagccgaatatcatttatagaaccaattccta 8217637  T
Q  334 gaattat 340  Q
    |||||||    
T  8217636 gaattat 8217630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 43440801 - 43440497
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||| || |||||||||||||||||||||||||||||        |||||||||||||||||||  | |||||||| | |||||||||| ||    
T  43440801 tagtattttcatgataaaaagatatttttgactagtaattattccaataaaaactatcaattcggcaacaaagtcactcatgccggacaatgcaagataa 43440702  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
      |||| |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  43440701 atcatcaataagatagtaaaaatcgtgaatatttttagcattgggatagccattccgtccatttcgtcaagataaagaagacgtagtttatcataactag 43440602  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||  |||||||       ||||||| ||||||||||||||||||||||||||||||| || |||||||||| || ||||||||||||||| |||||||||    
T  43440601 tttttgccaag-aaaaaagggcagcgccaataaatccatgagatattatttgtaaaacggtcccgttgagctcaatatcacttatagaacaaattcctag 43440503  T
Q  335 aattat 340  Q
    ||||||    
T  43440502 aattat 43440497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 26865631 - 26865435
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||||||||||||||||||||| |||||||||||||||        ||||||||| |||||||||||| |||||||||| |||||||| ||||    
T  26865631 tagtattttcatcatgaaaagatattttttactagtaattattccaaaaaaaactatcaattgggcaacaaaaccactcatgcccgacaatgcaaaagaa 26865532  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  26865531 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcctcaagataaagaaggcgtagtctatcataac 26865435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 18950794 - 18950752
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattatt 77  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  18950794 tagtattttcatcatgaaaagatatttttgactggtatttatt 18950752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 24451852 - 24452156
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||        |||||||||| |||||||||||  ||||||||| |||||||||||||    
T  24451852 tagtattttcagcatgaaaagatatttttgaccagtaattattccaaaaaaaactatcaattcagcaacaaaaccattcatgcccgacaatgcaagagaa 24451951  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  24451952 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccacccatttcgtcaagataaagaagacgtagtttatcataactag 24452051  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||||| | |||       ||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||    
T  24452052 ttcctactaag-aaaaaagggtagcgccaataaatccatgagatattatttgtaaaacggtcccgttgagcccaatatcacttacagaaccaattcctag 24452150  T
Q  335 aattat 340  Q
    ||||||    
T  24452151 aattat 24452156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 37706679 - 37706376
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||| ||||| |||| |||||||||||||    
T  37706679 tagtattttcatcatgaaaagatatttttgactagtaattattc-aaaaaaaactatcaattaggcaacaaaaccactcatacccgacaatgcaagagaa 37706581  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  37706580 gtcatcgataagatagtgaaaatcgtgaatatttttgacattgggatagccattccgcccatgtcgtcaagataaagaagacgtagtttatcgtaactag 37706481  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    |||||||||||       ||| ||| ||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||    
T  37706480 ttcctgccaag-aaaaaagggtagcgccaataaatccatgatatattatttgtaaaacggcctcgttgagcccaatatcacttacagaaccaattcctag 37706382  T
Q  335 aattat 340  Q
    ||||||    
T  37706381 aattat 37706376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 35369557 - 35369861
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||| ||||||| || |||| ||||||||    
T  35369557 tagtattttcatcatgaaaagatatttttgtctagtaattattccaaaaaa--ctatcaattcggcaacaaaaccactcatgcgcgacaatccaagagaa 35369654  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataa--ct 232  Q
    | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||    
T  35369655 gtcttcaataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagaagtagtctatcataactct 35369754  T
Q  233 agttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcct 332  Q
    |||||||||||||       ||||||  |||||||||| |||| ||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||    
T  35369755 agttcctgccaag-aaaaaagggcagtgccaataaatctatgatatattatttgtaaaacggcctcgttgagcccaatatcacttatataaccaattcct 35369853  T
Q  333 agaattat 340  Q
    | ||||||    
T  35369854 ataattat 35369861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 21135686 - 21135993
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    |||||||||||||||||||||||||||||||||||||||||||           |||||||||||| ||||||| | |||||||||| |||| |||||||    
T  21135686 tagtattttcatcatgaaaagatatttttgactagtaattatttaaaaaaaaaactatcaattcggaaacaaaatcactcatgcccgacaattcaagaga 21135785  T
Q  134 agccatcgataa-gatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataact 232  Q
    || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  21135786 agtcattgataaagatagtgaaaatcgtgaatatttttggcattgggatagccatttcgcccatttcgtcaagataaagaagacgtagtttatcataact 21135885  T
Q  233 agttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcct 332  Q
    | ||| ||| |||       ||| ||  |||||||||| |||| || |||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  21135886 aattcttgcaaagaaaaaaagggtagagccaataaatctatgaaatgttatttgtaaaacggccccgttgagcccaatatcacttatagaaccaattcct 21135985  T
Q  333 agaattat 340  Q
    | ||||||    
T  21135986 ataattat 21135993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 35863408 - 35863714
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||| | || ||||||| | |||||||||| ||||||||||||    
T  35863408 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaaactatcaagttggtaacaaaatcactcatgcccgacaatgcaagaga 35863507  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataacta 233  Q
    || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||| |||||||||||    
T  35863508 agtcatcgataagatagtgaaaattgtgaatatttttggcatcgggatagccattccgcctatttcgtcaagataaagaatgcgtagtttatcataacta 35863607  T
Q  234 gttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattccta 333  Q
    ||||||||||||       ||| ||| ||||||||||||||||||||||||||||||| || ||||||||||| | ||| || || | || ||| |||||    
T  35863608 gttcctgccaagaaaaaaagggtagcgccaataaatccatgagatattatttgtaaaacggtcccgttgagccaaatataacatacataatcaactccta 35863707  T
Q  334 gaattat 340  Q
    |||||||    
T  35863708 gaattat 35863714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 16473352 - 16473655
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||| ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||| |  ||||||||| ||||||||||||     
T  16473352 tagtactttcatcatgaaaagatatttttgactagtaattattc-taaaaaaactatcaattcggcaacaaaatcaatcatgcccgacaatgcaagagac 16473450  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | |||||||||||||||||||||||||||||||||| ||||||||||  | |||| |||||||| || ||||||||||||||||||| ||| ||||||||    
T  16473451 gtcatcgataagatagtgaaaatcgtgaatatttttagcattgggatgacaattctgcccattttgttaagataaagaagacgtagtttattataactag 16473550  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||||||| |||       ||  ||| ||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  16473551 ttcctgctaagaaaaaaaggatagcaccaat-aatccatgagatattatttgtaaaacggccccgttgagtccaatatcacttatagaaccaattcctag 16473649  T
Q  335 aattat 340  Q
    ||||||    
T  16473650 aattat 16473655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 16477923 - 16478226
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||| ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||| |  ||||||||| ||||||||||||     
T  16477923 tagtactttcatcatgaaaagatatttttgactagtaattattc-taaaaaaactatcaattcggcaacaaaatcaatcatgcccgacaatgcaagagac 16478021  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | |||||||||||||||||||||||||||||||||| ||||||||||  | |||| |||||||| || ||||||||||||||||||| ||| ||||||||    
T  16478022 gtcatcgataagatagtgaaaatcgtgaatatttttagcattgggatgacaattctgcccattttgttaagataaagaagacgtagtttattataactag 16478121  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||||||| |||       ||  ||| ||||| ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  16478122 ttcctgctaagaaaaaaaggatagcaccaat-aatccatgagatattatttgtaaaacggccccgttgagtccaatatcacttatagaaccaattcctag 16478220  T
Q  335 aattat 340  Q
    ||||||    
T  16478221 aattat 16478226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 35 - 241
Target Start/End: Complemental strand, 36063358 - 36063149
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn--ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagag 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||| || ||||||| || |||||||||||    
T  36063358 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaaaactatcaattcggcaacaaagccactcatgctcgacaatgcaagag 36063259  T
Q  133 aagccatcgataagatagtgaaaatcgtgaatattttt-ggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    ||| |||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  36063258 aagtcatcgataagatggtgaaaatcgtgaacattttttggcattgggatagtcattccgcccatttcgtcaagataaagaagacgtagtttatcataac 36063159  T
Q  232 tagttcctgc 241  Q
    ||||||||||    
T  36063158 tagttcctgc 36063149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 39337352 - 39337549
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnc-tatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||        | ||||||||||||||||||| | |||||||||| |||| ||| | |    
T  39337352 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaacctatcaattcggcaacaaaatcactcatgcccgacaattcaaaata 39337451  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  39337452 agtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagtcattccgcccatttcgtcaagataaagaaaacgtagtctatcataac 39337549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 41280665 - 41280545
Alignment:
Q  115 tgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaag 214  Q
    |||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| | ||  |||  ||||||||||||||||||||||||||||||    
T  41280665 tgcccgacaatgcaagagaagtcatcgataagatagtgaaaatcttgaatatttttggta-tgtaataatcattccgcccatttcgtcaagataaagaag 41280567  T
Q  215 acgtagtctatcataactagtt 236  Q
    ||||| | ||||||||||||||    
T  41280566 acgtaatttatcataactagtt 41280545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 13323507 - 13323428
Alignment:
Q  261 ccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    ||||| |||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  13323507 ccaatcaatccatgagatattatttgtacaacggccccgttgagcccaatatcacttatagaaccaatttctagaattat 13323428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 13323597 - 13323522
Alignment:
Q  88 ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaa 163  Q
    |||||||||||||||||||||  |||||||||| ||| |||| ||||| |||||||||||||||||||||| ||||    
T  13323597 ctatcaattcggcaacaaaacaactcatgcccgacaaagcaaaagaagtcatcgataagatagtgaaaatcatgaa 13323522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 41281222 - 41281180
Alignment:
Q  37 gtattttcatcatgaaaagatatttttgactagtaattattcc 79  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||    
T  41281222 gtatttttatcaggaaaatatatttttgactagtaattattcc 41281180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 23932031 - 23931998
Alignment:
Q  300 ttgagcccagtatcacttatagaaccaattccta 333  Q
    ||||||||| ||||||||||||||||||||||||    
T  23932031 ttgagcccaatatcacttatagaaccaattccta 23931998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 5079431 - 5079123
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn---ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaaga 131  Q
    ||||||||||||||| |||||||||||||||||||||||||||||           |||||||||||||||||||||| |||||| ||| ||||||||||    
T  5079431 tagtattttcatcataaaaagatatttttgactagtaattattccaaaaaaaaaaactatcaattcggcaacaaaaccactcatgtccgacaatgcaaga 5079332  T
Q  132 gaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5079331 gaagtcatcgataagatagtgaaaatcgtgaatatttttggaattgggatagcctttccgcccatttcgtcaagataaagaagacgtagtctatcataac 5079232  T
Q  232 tagttcctgccaag-nnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattc 330  Q
    ||||||||||||||        ||||||  ||||||||||  ||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||||||    
T  5079231 tagttcctgccaagaaaaaaaagggcagtgccaataaatctgtgagatattatttgtaaaacggcctcgttgag-ccagtgtcacttatagaaccaattc 5079133  T
Q  331 ctagaattat 340  Q
    ||||||||||    
T  5079132 ctagaattat 5079123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 17245951 - 17246147
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||| ||||||||||        |||||||||||||||||||||| |||||||||| |||||||| ||||    
T  17245951 tagtattttcatcatgaaaagatatttttgactattaattattccaaaaaaaactatcaattcggcaacaaaaccactcatgcccgacaatgcaaaagaa 17246050  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17246051 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattcctcccatttcgtcaagataaagaagacgtagtctatcataac 17246147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 18502946 - 18502902
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattcc 79  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  18502946 tagtattttcatcatgaaaagatatttttgactaataattattcc 18502902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 25839549 - 25839494
Alignment:
Q  285 tgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    |||||||||||   ||||| ||||||||||||||||||||||| || |||||||||    
T  25839549 tgtaaaatggcattgttgaacccagtatcacttatagaaccaaatcttagaattat 25839494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 38 - 340
Target Start/End: Complemental strand, 46596697 - 46596394
Alignment:
Q  38 tattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnc-tatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaagc 136  Q
    |||||||||||||||||||||||||||| |||||||||||||          |||||||| |||||| ||||| |||||||| | ||||||||||||||     
T  46596697 tattttcatcatgaaaagatatttttgattagtaattattccaaaaaaaaaatatcaattaggcaaccaaaccactcatgccggacaatgcaagagaagt 46596598  T
Q  137 catcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactagtt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  46596597 catcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgctcatttcgtcaagataaagaagacgtagtttatcataactagtt 46596498  T
Q  237 cctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaa 336  Q
    |||||||||       ||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||| | ||||||||| |||||||||||| ||    
T  46596497 cctgccaagaaaaaaagggcagcaccaataaatccatgatatattatttgtaaaacggcctcgttgagcccaatttcacttataaaaccaattcctataa 46596398  T
Q  337 ttat 340  Q
    ||||    
T  46596397 ttat 46596394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 30982306 - 30982001
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| | || ||||| ||||||||||||    
T  30982306 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaaactatcaattcggcaacaaaaccacccacgcccg-caatgcaagaga 30982208  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataacta 233  Q
    || ||||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  30982207 agtcatcgataagatagtgaaaattgtgaatttttttggcattgggataaccactccgcccatttcgtcaagataaagaagacgtagtttatcataacta 30982108  T
Q  234 gttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattccta 333  Q
    ||||||||||||       ||| ||| ||||||||||||||||||||||||||||||| || | ||||||||||| |||||||| ||||| |||||||||    
T  30982107 gttcctgccaagaaaaaaagggtagcaccaataaatccatgagatattatttgtaaaacggtctcgttgagcccaatatcacttttagaatcaattccta 30982008  T
Q  334 gaattat 340  Q
     ||||||    
T  30982007 aaattat 30982001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 33708869 - 33708560
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn----ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaag 130  Q
    |||||||||||||||||||| |||||||||||||||||||||| |            ||| |||||||||||||||||| |||||| ||| |||||||||    
T  33708869 tagtattttcatcatgaaaatatatttttgactagtaattatttcaaaaaaaaaaaactaccaattcggcaacaaaaccactcatgtccgacaatgcaag 33708770  T
Q  131 agaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataa 230  Q
    ||||  |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  33708769 agaactcatcgataagatagtgaaaatcgtgaatatttttagcattaggatagtcattccgtccatttcgtcaagataaagaagacgtagtttatcataa 33708670  T
Q  231 ctagttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattc 330  Q
    ||| ||| |||||||       ||| ||   |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  33708669 ctaattcatgccaagaaaaaaagggtagtgtcaataaatccatgagatattatttataaaatggccccgttgagcccaatatcacttatagaaccaattc 33708570  T
Q  331 ctagaattat 340  Q
    ||||||||||    
T  33708569 ctagaattat 33708560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 35 - 340
Target Start/End: Complemental strand, 36363030 - 36362719
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn---ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaaga 131  Q
    |||||||||||||| ||||||||||||||||||||||| || |||           ||||||||||| |||||||||| |||||||  | ||||||||||    
T  36363030 tagtattttcatcacgaaaagatatttttgactagtaactactccaaaaaaaaaaactatcaattcgacaacaaaaccactcatgcttgacaatgcaaga 36362931  T
Q  132 gaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  36362930 gaagtcatcgataagataatgaaaattgtgaatatttttggcattgggatagccaatgcgcccatttcgtcaagataaagaagacgtagtttatcataac 36362831  T
Q  232 tagttcctgccaag---nnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaat 328  Q
    |||||||| |||||          ||  ||  ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  36362830 tagttcctaccaagaaaaaaaaaaggatagtgccaataaatccatgagatattatttgtaaaacggccccgttgagcccaatatcacttatagaaccaat 36362731  T
Q  329 tcctagaattat 340  Q
    || || ||||||    
T  36362730 tcataaaattat 36362719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 35 - 291
Target Start/End: Original strand, 12000088 - 12000345
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagaga 133  Q
    ||||||||||||||||||||||||||||| |||||||||||||||         |||| |||| |||||||||||| ||||| |||| ||||||||||||    
T  12000088 tagtattttcatcatgaaaagatattttttactagtaattattccaaaaaaaaactatgaatttggcaacaaaaccactcatacccgacaatgcaagaga 12000187  T
Q  134 agccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataacta 233  Q
    || ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12000188 agtcattgataagatagtgaaaatcgagaatattttttgcattgggatagccattccgcccatttcgtcaagataaagaagacatagtctatcataacta 12000287  T
Q  234 gttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaa 291  Q
    |||  |||||||       | ||||  |||||||||||||||||||||||||||||||    
T  12000288 gtttttgccaagaaagaaagagcagtgccaataaatccatgagatattatttgtaaaa 12000345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 12368163 - 12367967
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||| ||||||||||        |||||||||||||||||||||| |||||||| | |||||||| ||||    
T  12368163 tagtattttcatcatgaaaagatatttttgactaataattattccaaaaaaaactatcaattcggcaacaaaaccactcatgccagacaatgcaaaagaa 12368064  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  12368063 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaaaataaagaagatgtagtctgtcataac 12367967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 54 - 215
Target Start/End: Original strand, 40182032 - 40182193
Alignment:
Q  54 agatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtga 153  Q
    ||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40182032 agatatttttgactagtaattattccaaaaaaaactatcaatttggcaacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtga 40182131  T
Q  154 aaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40182132 aaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaaga 40182193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 37986669 - 37986473
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||  |||||||||| |||||||| | ||||| || | ||    
T  37986669 tagtattttcatcatgaaaagatatttttgactagtaattattccaaaaaaaactatcaattcaacaacaaaaccactcatgcctgacaatggaaaaaaa 37986570  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37986569 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccacccatttcgtcaagataaagaagacgtagtctatcataac 37986473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 15054024 - 15054223
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn---ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaaga 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||| ||||| |||| |||||||| |    
T  15054024 tagtattttcatcatgaaaagatatttttgactagtaattattccaacaaaaaaaactatcaattcggcaacaaaaccactcatacccgacaatgcaaaa 15054123  T
Q  132 gaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    |||  |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15054124 gaaatcatcaatatgatagtgaaaatcgtgaatatttttggcattgggatagtcattccgcccatttcgtcaagataaagaagacgtagtctatcataac 15054223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 36248696 - 36248894
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn-cta-tcaattcggcaacaaaaccgctcatgcccggcaatgcaagag 132  Q
    |||||||||||||||||| | ||||||||||||||||||||||||         ||| ||||||||||||||||||| |||||  ||| |||||||| ||    
T  36248696 tagtattttcatcatgaacatatatttttgactagtaattattccaaaaaaaaactaatcaattcggcaacaaaaccactcatatccgacaatgcaaaag 36248795  T
Q  133 aagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  36248796 aagtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagctattccgtccatttcgtcaagataaagaagacgtagtctatcataac 36248894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 35 - 231
Target Start/End: Original strand, 29231475 - 29231673
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnn--ctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagag 132  Q
    ||||||||||||||||||||||||||||| |||||||||||||||          ||||||||||||||| |||| | |||||| ||| |||||||| ||    
T  29231475 tagtattttcatcatgaaaagatattttttactagtaattattccaaaaaaaaaactatcaattcggcaagaaaatcactcatgtccgacaatgcaaaag 29231574  T
Q  133 aagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    ||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||    
T  29231575 aagtcatcgataagatagtgaaaatagtgaatattttttgcattgggatagtcattccacctatttcgtcaagataaagaaaacgtagtctatcataac 29231673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 24146 - 24441
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||| | |||||| ||| |||||||||||||    
T  24146 tagtattttcatcatgaaaagatatttttgactagtaattactccaaaaaagactatcaattcggcaacaaaatcactcatgtccgacaatgcaagagaa 24245  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | |||||||||||||||| | ||          |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||    
T  24246 gtcatcgataagatagtggatat----------tttggcattgggatagtcattccgcccatttcgtcaagataaagaagatgtagtttatcataattag 24335  T
Q  235 ttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctag 334  Q
    ||||| |||||       ||| ||| |||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  24336 ttcctcccaagaaaaaaagggtagcaccaataaatctatgagatattatttgtaaaacggcctcgttgagcccattatcacttatagaaccaattcctag 24435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 23052 - 22972
Alignment:
Q  151 tgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23052 tgaaaatcgtgattatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 22972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 239936 - 239741
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||| |||||||||||||||||||||| |        |||||||||||||||||||||| |||||||||| |||||||| ||||    
T  239936 tagtattttcatcatgaaaaaatatttttgactagtaattatttcaaaaaaa-ctatcaattcggcaacaaaaccactcatgcccgacaatgcaaaagaa 239838  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 231  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  239837 gtcatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataac 239741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 35 - 237
Target Start/End: Original strand, 35611 - 35812
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||        ||||||||||||||||| |||| |||||||||| |||||||||||||    
T  35611 tagtattttcatcatgaaaagatatttttgacaagtaactattccaaaaaaa-ctatcaattcggcaacagaaccactcatgcccgacaatgcaagagaa 35709  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatcataactag 234  Q
    | |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35710 gtcatcgataagatagtgaaaatcatgaatatttttggcattgggatagttattccgcccatttcatcaagataaagaagacgtagtctatcataactag 35809  T
Q  235 ttc 237  Q
    |||    
T  35810 ttc 35812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 38474 - 38553
Alignment:
Q  261 ccaataaatccatgagatattatttgtaaaatggccccgttgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| | || ||||||||||| |||||||||||||||||||    
T  38474 ccaataaatccatgatatattatttgtaaaacggccccgttgaactcaatatcacttatataaccaattcctagaattat 38553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 9884 - 9692
Alignment:
Q  35 tagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggcaacaaaaccgctcatgcccggcaatgcaagagaa 134  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||        |||| |||||||||| |||| | |||||||||| |||||||| ||||    
T  9884 tagtattttcatcattaaaagatgtttttgactagtaattattccagaaaaaactattaattcggcaagaaaatcactcatgcccgacaatgcaaaagaa 9785  T
Q  135 gccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcgtcaagataaagaagacgtagtctatca 227  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  9784 gtcatcgataagatagtgaaaatcgtgaatattttttgcattgggatagtcattccgcccatttcgtcaagataaagaagacgtggtctatca 9692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 172653 - 172314
Alignment:
Q  1 ttaatatcattccaattgcggttacaaaagtaattagtattttcatcatgaaaagatatttttgactagtaattattccnnnnnnnnctatcaattcggc 100  Q
    |||||||||||||||||||  |||||||||||||||||  |||   ||| || | | ||||| |||||||||||| |||        |||  ||||| ||    
T  172653 ttaatatcattccaattgccattacaaaagtaattagtgcttttggcattaacaaaaattttggactagtaattagtccaaaaaatactactaattctgc 172554  T
Q  101 aacaaaaccgctcatgcccggcaatgcaagagaagccatcgataagatagtgaaaatcgtgaatatttttggcattgggatagccattccgcccatttcg 200  Q
     |||||||| ||||| || || || |||||||||||||| || ||| || | || || || || ||||| |||||||||||||  ||||| |||| |||     
T  172553 gacaaaaccactcattcctggtaaggcaagagaagccattgaaaagctactaaacatggtaaaaattttaggcattgggatagatattcctcccagttct 172454  T
Q  201 tcaagataaagaagacgtagtctatcataactagttcctgccaagnnnnnnngggcagccccaataaatccatgagatattatttgtaaaatggccccgt 300  Q
    || ||||||| |||||| | ||||||| ||   ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  172453 tcgagataaacaagacgcattctatcagaagcggttcctgccaagaaaaaaagggcagccccaataaatccatgagatattatttgtaaaatggccccgt 172354  T
Q  301 tgagcccagtatcacttatagaaccaattcctagaattat 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  172353 tgagcccagtatcacttatagaaccaattcctagaattat 172314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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