View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13490_high_12 (Length: 350)

Name: NF13490_high_12
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13490_high_12
NF13490_high_12
[»] chr3 (1 HSPs)
chr3 (13-326)||(46541799-46542114)
[»] chr2 (3 HSPs)
chr2 (13-276)||(24385514-24385782)
chr2 (35-203)||(32074712-32074873)
chr2 (106-179)||(38316495-38316570)
[»] chr6 (3 HSPs)
chr6 (13-321)||(28974727-28975044)
chr6 (106-179)||(11296494-11296569)
chr6 (106-179)||(33679635-33679710)
[»] chr1 (2 HSPs)
chr1 (43-288)||(13795325-13795574)
chr1 (109-179)||(6195436-6195508)
[»] scaffold0002 (1 HSPs)
scaffold0002 (104-191)||(468889-468979)
[»] chr7 (7 HSPs)
chr7 (13-154)||(21535269-21535411)
chr7 (106-179)||(12803711-12803786)
chr7 (74-179)||(43548789-43548897)
chr7 (106-179)||(6963883-6963958)
chr7 (106-179)||(38430989-38431064)
chr7 (131-180)||(24818837-24818885)
chr7 (154-191)||(28578396-28578433)
[»] chr5 (4 HSPs)
chr5 (108-190)||(36330329-36330414)
chr5 (74-179)||(33321338-33321446)
chr5 (106-179)||(2500455-2500530)
chr5 (154-191)||(16090914-16090951)
[»] chr8 (3 HSPs)
chr8 (163-350)||(31468551-31468739)
chr8 (106-179)||(9466725-9466799)
chr8 (13-86)||(31468468-31468543)
[»] chr4 (1 HSPs)
chr4 (106-179)||(15850769-15850844)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 46542114 - 46541799
Alignment:
Q  13 atactaggattccattaatgtca--gagagttcataataaattagatgattacaacttacaatagatttatctcatgactcaatcaacaaaaggcttagc 110  Q
    |||||||||||||||||||||||  |||||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  46542114 atactaggattccattaatgtcaaagagagttcataacaaattacatgattacaacttacaataggtttatctcatgacttaatcaacagaaggcttagc 46542015  T
Q  111 tactcataactagacaatcaataacaaaggaataatgaaacatataaatcagaaccaactatgagttggtgtaagatccacgacatgtttctatatctct 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46542014 tactcataactagacaatcaataacaaaggaataatgaaacatataaatcagaaccaactatgagttggtgtaagatccacgacatgtttctatatctct 46541915  T
Q  211 gactgcctcctatgctctgaagtctcataaaaaccgaacccttattatgaattcgcatctggctttatagagaaatttttgtaacagcctccaacatgcc 310  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46541914 gactgcctcctatgctctgaagtctcataaaaatcgaacccttattatgaattcgcatctggctttattgagaaatttttgtaacagcctccaacatgcc 46541815  T
Q  311 acgttataggtccaac 326  Q
    |||||| ||| |||||    
T  46541814 acgttacagggccaac 46541799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 24385514 - 24385782
Alignment:
Q  13 atactaggattccattaatgtca--gagagttcataataaattagatgattacaacttacaatagatttatctcatgactcaatcaacaaaaggcttagc 110  Q
    |||||||||||||||| ||||||  |||||||||||| |||||| || |||||||||||||||||||| |||||||| || |||||||||| |||||| |    
T  24385514 atactaggattccattcatgtcaaagagagttcataacaaattacattattacaacttacaatagattcatctcatggcttaatcaacaaatggcttaac 24385613  T
Q  111 tactcataacta-gacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttggtgtaagatccacgacatgtttctatatc 207  Q
    | |||||||||| |||||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||| || | |||||| ||||||||  ||    
T  24385614 ttctcataactaagacaatcactaacaaaggaataatgatacatacataaatcagaaccaactatgagttggtgtgaggtgcacgacgtgtttctaggtc 24385713  T
Q  208 tctgactgcctcctatgctctgaagtctcataaaaaccgaacccttattatgaattcgcatctggcttt 276  Q
    ||  ||||||||||||||||||||||||| |||||| |||||| |  || |||||| ||||||||||||    
T  24385714 tccaactgcctcctatgctctgaagtctcctaaaaatcgaaccttctttctgaatttgcatctggcttt 24385782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 32074712 - 32074873
Alignment:
Q  35 agagagttcataataaattagatgattacaacttacaatagatttatctcatgactcaatcaacaaaaggcttagctactcataactagacaatcaataa 134  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||||||| || |||||| ||| || ||||      ||||  |||||||||||||    
T  32074712 agagagttcataacaaattacatgattacaacttacaatagattcatctcatggcttaatcaa-aaagggtttag------ataa--agacaatcaataa 32074802  T
Q  135 caaaggaataatgaaacat--ataaatcagaaccaactatgagttggtgtaagatccacgacatgtttcta 203  Q
    |||| ||||||||||||||  ||||||  ||||||||||||||||||||| ||||||||||| ||||||||    
T  32074803 caaatgaataatgaaacatgcataaattggaaccaactatgagttggtgtgagatccacgacgtgtttcta 32074873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 38316495 - 38316570
Alignment:
Q  106 ttagctactcataactagacaatcaataacaaaggaataatgaaacat--ataaatcagaaccaactatgagttgg 179  Q
    ||||||||||||||||| ||||||||  ||| || ||||||  |||||  |||||||||||||||| |||||||||    
T  38316495 ttagctactcataactaaacaatcaaatacatagaaataatagaacatacataaatcagaaccaacaatgagttgg 38316570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 28974727 - 28975044
Alignment:
Q  13 atactaggattccattaatgtca--gagagttcataataaattagatgattacaacttacaatagatttatctcatgactcaatcaacaaaaggcttagc 110  Q
    ||||||| |||||||| ||||||  |||||||||||| |||||| ||||||||||||||||| ||| | ||||||||||| |||||| | ||  ||||||    
T  28974727 atactagtattccattgatgtcaaagagagttcataacaaattacatgattacaacttacaacagagtcatctcatgacttaatcaatagaaaacttagc 28974826  T
Q  111 tactcataact-agacaatcaataacaaaggaataatgaaacatata-aatca----gaaccaactatgagttggtgtaagatccacgacatgtttctat 204  Q
    ||||||||| | ||||||||||||| ||||||||||||| ||||| | |||||     || ||||||||| ||||||| || ||||| |  ||||||||     
T  28974827 tactcataattaagacaatcaataagaaaggaataatgagacatacataatcataattaatcaactatgaattggtgtgagttccactatgtgtttctag 28974926  T
Q  205 atctctgactgcctcctatgctctgaagtctcataaaaaccgaacccttattatgaattcgcatctggc-tttatagagaaatttttgtaacagcctcca 303  Q
     |||||  ||||||| |||| |||||| |||| |||||| | |||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||    
T  28974927 ctctctagctgcctcatatgttctgaaatctcctaaaaatcaaacccttattttgaattcgcatctgacttttatagagaaatttatgtaacaggctcca 28975026  T
Q  304 acatgccacgttataggt 321  Q
    || |||||| ||||||||    
T  28975027 acgtgccacattataggt 28975044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 11296494 - 11296569
Alignment:
Q  106 ttagctactcataactagacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttgg 179  Q
    ||||||||||||||||| |||| |||  ||| || ||||||  ||||||  |||||||||||||||||||||||||    
T  11296494 ttagctactcataactaaacaaccaaatacatagaaataatagaacatacataaatcagaaccaactatgagttgg 11296569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 33679635 - 33679710
Alignment:
Q  106 ttagctactcataactagacaatcaataacaaaggaataatgaaacat--ataaatcagaaccaactatgagttgg 179  Q
    ||||||||||||||||| ||||||||  ||| || ||||||  |||||  ||||||||||||||||||| ||||||    
T  33679635 ttagctactcataactaaacaatcaaatacatagaaataatataacatacataaatcagaaccaactattagttgg 33679710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 43 - 288
Target Start/End: Original strand, 13795325 - 13795574
Alignment:
Q  43 cataataaattagatgattacaacttacaatagatttatctcatgactcaatcaacaaaaggcttagctactcataacta-gacaatcaataacaaagga 141  Q
    ||||| |||||| ||||||||| ||||||||||||| ||  |||| || |||||||||||  ||||| |||||| ||||| |||||||||||||||||||    
T  13795325 cataacaaattacatgattacatcttacaatagattcattgcatggcttaatcaacaaaaatcttagttactcacaactaagacaatcaataacaaagga 13795424  T
Q  142 ataatgaaacata--taaatcagaaccaactatgagttggtgtaagatccacgacatgtttctatatctctgactgcctcctatgctctgaagtctcata 239  Q
    |||||||||||||  || |||| |||||||||||||||||||| ||||| ||  | |||||||| |||||||  ||||||||||||||| ||||||  ||    
T  13795425 ataatgaaacatacatatatcaaaaccaactatgagttggtgtgagatctactgcgtgtttctaaatctctggatgcctcctatgctctcaagtcttcta 13795524  T
Q  240 aaaaccgaacccttattatgaattcgcatctggc-tttatagagaaattt 288  Q
    |||| | |||||||||| | ||||| ||| | || |||||||| ||||||    
T  13795525 aaaatcaaacccttattctaaattcacatatcgcttttatagacaaattt 13795574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 6195508 - 6195436
Alignment:
Q  109 gctactcataactagacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttgg 179  Q
    |||||||||||||| ||||||||  ||| || ||||||  ||||||  |||||||||||||||||||||||||    
T  6195508 gctactcataactaaacaatcaaatacatagaaataatagaacatacataaatcagaaccaactatgagttgg 6195436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 468889 - 468979
Alignment:
Q  104 gcttagctactcataacta-gacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttggtgtaagatccac 191  Q
    |||||||||||| |||||| |||||| || |||| ||||||||| |||||||  |||||||| ||||||||||||||||||| ||||||||    
T  468889 gcttagctactcttaactaagacaattaacaacataggaataataaaacatacataaatcaggaccaactatgagttggtgtgagatccac 468979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 21535269 - 21535411
Alignment:
Q  13 atactaggattccattaatgtcagag--agttcataataaattagatgattacaacttacaatagatttatctcatgactcaatcaacaaaaggcttagc 110  Q
    |||||||||||||||| |||| ||||  |||| ||| ||||| |  ||| ||||||||||| |||||| |||||||| ||  ||||| ||| | ||||||    
T  21535269 atactaggattccattgatgtaagagggagtttata-taaatcacgtgaatacaacttacactagattcatctcatggctttatcaa-aaaggacttagc 21535366  T
Q  111 tactcataacta-gacaatcaataacaaaggaataatgaaacata 154  Q
    |||||||||||| |||||||||||||||||||  | |||||||||    
T  21535367 tactcataactaagacaatcaataacaaaggataattgaaacata 21535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 12803711 - 12803786
Alignment:
Q  106 ttagctactcataactagacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttgg 179  Q
    ||||||||||||||||| ||||||||  ||| || ||||||  ||||||  |||||||||||||||||||||||||    
T  12803711 ttagctactcataactaaacaatcaaatacatagaaataatagaacatacataaatcagaaccaactatgagttgg 12803786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 43548897 - 43548789
Alignment:
Q  74 agatttatctcatgactcaatcaacaaaag-gcttagctactcataactagacaatcaataacaaaggaataatgaaacat--ataaatcagaaccaact 170  Q
    ||||| |||||||| || |||||| | ||| | ||||||||||||||||| ||||| ||  ||| || ||||||  |||||  |||||||||||||||||    
T  43548897 agattcatctcatggcttaatcaatataagagtttagctactcataactaaacaatgaaatacacagaaataatagaacatgcataaatcagaaccaact 43548798  T
Q  171 atgagttgg 179  Q
    |||||||||    
T  43548797 atgagttgg 43548789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 6963958 - 6963883
Alignment:
Q  106 ttagctactcataactagacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttgg 179  Q
    ||||||||||||||||| |||||| |  ||| || ||||||  ||||||  |||||||||||||||||||||||||    
T  6963958 ttagctactcataactaaacaatcgaatacatagaaataatagaacatacataaatcagaaccaactatgagttgg 6963883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 38431064 - 38430989
Alignment:
Q  106 ttagctactcataactagacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttgg 179  Q
    ||||||||||||||||| ||||||||  ||| || ||||||  ||||||  ||||||| |||||||||||||||||    
T  38431064 ttagctactcataactaaacaatcaaatacatagaaataatagaacatacataaatcaaaaccaactatgagttgg 38430989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 24818837 - 24818885
Alignment:
Q  131 ataacaaaggaataatgaaacatataaatcagaaccaactatgagttggt 180  Q
    ||||||||| |||||||||||||||||||||  | |||||||||||||||    
T  24818837 ataacaaag-aataatgaaacatataaatcaagatcaactatgagttggt 24818885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 28578396 - 28578433
Alignment:
Q  154 ataaatcagaaccaactatgagttggtgtaagatccac 191  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  28578396 ataaatcagaaccaacaatgagttggtgtgagatccac 28578433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 36330414 - 36330329
Alignment:
Q  108 agctactcataactaga-caatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttggtgtaagatcca 190  Q
    ||||||||||||| | | |||| ||||||| || ||||||  ||||||  |||||||||||||||||||||||||||| |||||||    
T  36330414 agctactcataaccaaaacaattaataacatagaaataatagaacatacataaatcagaaccaactatgagttggtgtgagatcca 36330329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 33321338 - 33321446
Alignment:
Q  74 agatttatctcatgactcaatcaacaaaag-gcttagctactcataactagacaatcaataacaaaggaataatgaaacata--taaatcagaaccaact 170  Q
    ||||| ||||||||||| ||||||   ||| | ||||||||||||||||| ||||| ||  ||| || ||||||  ||||||  ||||||||||||||||    
T  33321338 agattcatctcatgacttaatcaatctaagagtttagctactcataactaaacaattaaatacatagaaataatagaacatacataaatcagaaccaact 33321437  T
Q  171 atgagttgg 179  Q
    |||||||||    
T  33321438 atgagttgg 33321446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 2500455 - 2500530
Alignment:
Q  106 ttagctactcataactagacaatcaataacaaaggaataatgaaacat--ataaatcagaaccaactatgagttgg 179  Q
    ||||||||||||||||| ||||||||  ||| || ||||||  |||||  |||||||| |||||||||||||||||    
T  2500455 ttagctactcataactaaacaatcaaatacatagaaataatagaacatacataaatcacaaccaactatgagttgg 2500530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 16090914 - 16090951
Alignment:
Q  154 ataaatcagaaccaactatgagttggtgtaagatccac 191  Q
    |||||||||||||||||||||||||||  |||||||||    
T  16090914 ataaatcagaaccaactatgagttggttgaagatccac 16090951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 350
Target Start/End: Original strand, 31468551 - 31468739
Alignment:
Q  163 aaccaactatgagttggtgtaagatccacgacatgtttctatatctctgactgcctcctatgctctgaagtctcataaaaaccgaacccttattatgaat 262  Q
    |||||||| ||||||||||| || |||||||| |||||| |  |||||  |||| ||||||||| ||||||||  |||||| ||||||  |||| ||||     
T  31468551 aaccaactctgagttggtgtgaggtccacgacgtgtttcaaggtctctagctgcttcctatgctttgaagtcttctaaaaatcgaacctctattctgaaa 31468650  T
Q  263 tcgcatctgg-ctttatagagaa-atttttgtaacagcctccaacatgccacgttataggtccaacgtggtatgatggcttcattaatcc 350  Q
    ||  ||||||  |||||||| || ||| ||||||||  | ||| | ||| ||||||| ||||||  |||| |||||| ||||||||||||    
T  31468651 tcaaatctggattttatagaaaatattattgtaaca-acaccaccgtgctacgttatgggtccactgtggcatgatgacttcattaatcc 31468739  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 9466799 - 9466725
Alignment:
Q  106 ttagctactcataactagacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttgg 179  Q
    ||||||||||||||||| ||||||||  ||| || ||||||  ||||||  |||||||||| ||||||||||||||    
T  9466799 ttagctactcataactaaacaatcaaatacatag-aataatataacatacataaatcagaagcaactatgagttgg 9466725  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 31468468 - 31468543
Alignment:
Q  13 atactaggattccattaatgtcagaga--gttcataataaattagatgattacaacttacaatagatttatctcat 86  Q
    |||||| ||||||||| |||| | |||  ||| |||| |||| | ||||||||||||||||||||||| |||||||    
T  31468468 atactatgattccattgatgttaaagaaagtttataacaaatgacatgattacaacttacaatagattcatctcat 31468543  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 15850844 - 15850769
Alignment:
Q  106 ttagctactcataactagacaatcaataacaaaggaataatgaaacata--taaatcagaaccaactatgagttgg 179  Q
    ||||||||| ||||||| ||||||||  ||| || ||||||  ||||||  || ||||||||||||||||||||||    
T  15850844 ttagctacttataactaaacaatcaaatacatagaaataatagaacatacatatatcagaaccaactatgagttgg 15850769  T

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