View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13490_high_13 (Length: 346)
Name: NF13490_high_13
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 29391029 - 29390694
Alignment:
| Q |
11 |
ttattctcatagctgtttgttgtacattaactatttggcttggttctaatgatcagggactccttacagagacaacagtagtggacgtgttgaatttgat |
110 |
Q |
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| T |
29391029 |
ttattctcacagctgtttgttgtacattaactatttggcttggttctaatgatcagggactccttacagagacaacagtagtggacgtgttgaatttgat |
29390930 |
T |
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| Q |
111 |
ccaatcaaattacataatgactactgtccttgggtgaatggagttgttgcggctgctggctgtgatagtccttgttccacttctgatgtgggtcctgcag |
210 |
Q |
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| T |
29390929 |
ccaatcaaattacataatgactactgtccttgggtgaatggagttgttgcggctgctggctctgatagtccttgttccacttctgatgtgggtcctgcag |
29390830 |
T |
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| Q |
211 |
ctcgttgtggctggcagctgactttggaagcccttgattctttccagttgcttgggcatcttccagtgcaaactctggaatccgagtcggcagcatccat |
310 |
Q |
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| T |
29390829 |
ctcgttgtggctggcagctgactttggaagcccttgattctttccagttgcttgggcatcttccagtgcaaactctggaatccgagtcggcagcatccat |
29390730 |
T |
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| Q |
311 |
gtgcaaggtttgttctggttttctcacccttgtttt |
346 |
Q |
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| T |
29390729 |
gtgtaaggtttgttctggttttctcacccttgtttt |
29390694 |
T |
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