View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13490_high_14 (Length: 319)
Name: NF13490_high_14
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 43548592 - 43548275
Alignment:
| Q |
11 |
catagggtgcttaagagaaattataatgtatatttgacgggttagagttacccttgtactcctgaaatcgagaaaaagagcaagtctacaaacgaaatgg |
110 |
Q |
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| T |
43548592 |
catagggtgcttaagagaaattataatgtatatttgacgggttagagttacccttgtactcctgaaatcgagaaaaagagcaagtctacaaacgaaatgg |
43548493 |
T |
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| Q |
111 |
ag--ttaatcctaggcttaactcctttaaaatgtgattagccaaaataagaacttacctccatatacttgattgaataatataccaactacaactttcga |
208 |
Q |
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| T |
43548492 |
agagttaatcctaggcttaactcctttaaaatgtaattagccaaaataagaacttacctccatatacttgattgaataatataccaactacaactttcga |
43548393 |
T |
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| Q |
209 |
tgtcgcagggaatgactcctggctgtcagttaaatatctgattaaatggtgggcatagta-------aataacaaacaattcaaaaattagcaggccttg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43548392 |
tgtcgcagggaatgactcctggctgtcagttaaatatctgattaaatggtgggcatagtaaatagtaaataacaaacaattcaaaaattagcaggccttg |
43548293 |
T |
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| Q |
302 |
taggtcactccaactaat |
319 |
Q |
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|||||||||||||||||| |
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| T |
43548292 |
taggtcactccaactaat |
43548275 |
T |
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