View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13490_high_16 (Length: 316)
Name: NF13490_high_16
Description: NF13490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13490_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 46489760 - 46489958
Alignment:
| Q |
2 |
agttaattactttataattatgcccattctttagttcgtaatttaccaatcaaaagctttaactatcatgtcattggacatcaaaataaagaagataaaa |
101 |
Q |
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| T |
46489760 |
agttaattactttataattatgcccattctttagttcgtaatttaccaatcaaaaggtttaactatcatgtcattggacatcaaaataaagaagataaaa |
46489859 |
T |
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| Q |
102 |
atcggataaatattgaaattaannnnnnnnnaccatattattgaaatgaatgtttaaaccttattgatatatgtattaggggtcgctaacttaccccca |
200 |
Q |
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| T |
46489860 |
atcggataaatattgaaattaatttttttttaccatattattgaaatgaatgtttaaaccttattgatatatgtattaggggttgctaacatactccca |
46489958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 46489989 - 46490050
Alignment:
| Q |
193 |
tacccccaccagtgttttaccaaaatatcaatatccactatttttattcgagtatattgcac |
254 |
Q |
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| T |
46489989 |
tacccccacccgtgttttaccaaaatatcatcttccactatttttattcgagtaaattgcac |
46490050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 46490071 - 46490099
Alignment:
| Q |
278 |
tttgaattacactcctctaacctcctatg |
306 |
Q |
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| T |
46490071 |
tttgaattacactcctctaacctcctatg |
46490099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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